登録情報 | データベース: PDB / ID: 5vah |
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タイトル | Crystal structure of ATXR5 SET domain in complex with histone H3 di-methylated on R26 |
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要素 | - Histone H3.2
- Probable Histone-lysine N-methyltransferase ATXR5
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キーワード | TRANSFERASE/DNA BINDING PROTEIN / histone / nucleosome / methyltransferases / TRANSFERASE-DNA BINDING PROTEIN complex |
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機能・相同性 | 機能・相同性情報
[histone H3]-lysine27 N-methyltransferase / histone H3K27 monomethyltransferase activity / chromocenter / plastid / histone acetyltransferase activity / chloroplast / transcription coregulator activity / structural constituent of chromatin / nucleosome / methylation ...[histone H3]-lysine27 N-methyltransferase / histone H3K27 monomethyltransferase activity / chromocenter / plastid / histone acetyltransferase activity / chloroplast / transcription coregulator activity / structural constituent of chromatin / nucleosome / methylation / protein heterodimerization activity / chromatin binding / regulation of transcription by RNA polymerase II / DNA binding / extracellular region / nucleus / metal ion binding / plasma membrane / cytosol類似検索 - 分子機能 Beta-clip-like / SET domain / SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain / SET domain superfamily / SET domain / SET domain profile. / SET domain / Zinc finger, PHD-type, conserved site / PHD-finger / Zinc finger PHD-type signature. ...Beta-clip-like / SET domain / SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain / SET domain superfamily / SET domain / SET domain profile. / SET domain / Zinc finger, PHD-type, conserved site / PHD-finger / Zinc finger PHD-type signature. / Beta Complex / Zinc finger PHD-type profile. / Zinc finger, PHD-finger / Histone H3 signature 1. / Zinc finger, PHD-type / PHD zinc finger / Histone H3 signature 2. / Histone H3 / Histone H3/CENP-A / Histone H2A/H2B/H3 / Core histone H2A/H2B/H3/H4 / Zinc finger, FYVE/PHD-type / Histone-fold / Zinc finger, RING/FYVE/PHD-type / Mainly Beta類似検索 - ドメイン・相同性 S-ADENOSYL-L-HOMOCYSTEINE / Probable Histone-lysine N-methyltransferase ATXR5 / Histone H3.1類似検索 - 構成要素 |
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生物種 | Ricinus communis (トウゴマ) Arabidopsis thaliana (シロイヌナズナ) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.4 Å |
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データ登録者 | Bergamin, E. / Sarvan, S. / Malette, J. / Eram, M. / Yeung, S. / Mongeon, V. / Joshi, M. / Brunzelle, J.S. / Michaels, S.D. / Blais, A. ...Bergamin, E. / Sarvan, S. / Malette, J. / Eram, M. / Yeung, S. / Mongeon, V. / Joshi, M. / Brunzelle, J.S. / Michaels, S.D. / Blais, A. / Vedadi, M. / Couture, J.-F. |
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引用 | ジャーナル: Nucleic Acids Res. / 年: 2017 タイトル: Molecular basis for the methylation specificity of ATXR5 for histone H3. 著者: Bergamin, E. / Sarvan, S. / Malette, J. / Eram, M.S. / Yeung, S. / Mongeon, V. / Joshi, M. / Brunzelle, J.S. / Michaels, S.D. / Blais, A. / Vedadi, M. / Couture, J.F. |
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履歴 | 登録 | 2017年3月26日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2017年4月5日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2017年4月19日 | Group: Database references |
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改定 1.2 | 2017年9月20日 | Group: Database references / カテゴリ: citation Item: _citation.journal_volume / _citation.page_first / _citation.page_last |
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改定 2.0 | 2023年10月4日 | Group: Data collection / Database references ...Data collection / Database references / Polymer sequence / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / entity_poly / pdbx_initial_refinement_model Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _entity_poly.pdbx_seq_one_letter_code_can |
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改定 2.1 | 2023年11月15日 | Group: Data collection / カテゴリ: chem_comp_atom / chem_comp_bond / Item: _chem_comp_atom.atom_id / _chem_comp_bond.atom_id_2 |
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