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Open data
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Basic information
Entry | Database: PDB / ID: 5v2r | ||||||||||||||||||||||||||||
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Title | Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop | ||||||||||||||||||||||||||||
![]() | RNA (5'-R(*![]() RNA / 3RRs GA Sheared Pairs AC Pair | Function / homology | RNA / RNA (> 10) | ![]() Biological species | synthetic construct (others) | Method | SOLUTION NMR / simulated annealing | ![]() Kauffmann, A.D. / Kennedy, S.D. / Turner, D.H. | Funding support | | ![]()
![]() ![]() Title: Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions. Authors: Kauffmann, A.D. / Kennedy, S.D. / Zhao, J. / Turner, D.H. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 621.5 KB | Display | ![]() |
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PDB format | ![]() | 518.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 364.5 KB | Display | ![]() |
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Full document | ![]() | 682.5 KB | Display | |
Data in XML | ![]() | 21 KB | Display | |
Data in CIF | ![]() | 37.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 4878.018 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 6 | ||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest restraint energy | ||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest restraint energy Conformers calculated total number: 100 / Conformers submitted total number: 33 |