+Open data
-Basic information
Entry | Database: PDB / ID: 5v2r | ||||||||||||||||||||||||||||
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Title | Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop | ||||||||||||||||||||||||||||
Components | RNA (5'-R(*Keywords | RNA / 3RRs GA Sheared Pairs AC Pair | Function / homology | RNA / RNA (> 10) | Function and homology information Biological species | synthetic construct (others) | Method | SOLUTION NMR / simulated annealing | Authors | Kauffmann, A.D. / Kennedy, S.D. / Turner, D.H. | Funding support | United States, 1items |
Citation | Journal: Biochemistry / Year: 2017 | Title: Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions. Authors: Kauffmann, A.D. / Kennedy, S.D. / Zhao, J. / Turner, D.H. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5v2r.cif.gz | 620.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5v2r.ent.gz | 535.3 KB | Display | PDB format |
PDBx/mmJSON format | 5v2r.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/v2/5v2r ftp://data.pdbj.org/pub/pdb/validation_reports/v2/5v2r | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 4878.018 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 6 | ||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest restraint energy | ||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest restraint energy Conformers calculated total number: 100 / Conformers submitted total number: 33 |