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- PDB-5uxi: Protein 4 with aldehyde deformylating oxygenase activity from Nos... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5uxi | ||||||
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Title | Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme | ||||||
![]() | Aldehyde decarbonylase | ||||||
![]() | LYASE / decarbonylase / iron / ferritin | ||||||
Function / homology | ![]() aldehyde oxygenase (deformylating) / : / : / transition metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wilson, D.K. / Mak, W.S. / Siegel, J.B. | ||||||
![]() | ![]() Title: Protein 4 with aldehyde deformylating oxygenase activity from Nostoc puntiforme Authors: Wilson, D.K. / Mak, W.S. / Siegel, J.B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 61.4 KB | Display | ![]() |
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PDB format | ![]() | 44.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 437.5 KB | Display | ![]() |
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Full document | ![]() | 439.6 KB | Display | |
Data in XML | ![]() | 12 KB | Display | |
Data in CIF | ![]() | 16.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 26487.033 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: ATCC 29133 / PCC 73102 / Gene: Npun_R1711 / Plasmid: pTYB2 / Details (production host): IMPACT fusion / Production host: ![]() ![]() References: UniProt: B2J1M1, aldehyde oxygenase (deformylating) | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 46.53 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 1.8M ammonium sulfate, 180 mM NaCl, 90 mM cacodylate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 325 mm CCD / Detector: CCD / Date: Jun 9, 2011 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97 Å / Relative weight: 1 |
Reflection | Resolution: 2→29.96 Å / Num. obs: 17521 / % possible obs: 98.6 % / Redundancy: 20.2 % / Net I/σ(I): 72.3 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.309 Å2
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Refinement step | Cycle: 1 / Resolution: 2→29.96 Å
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Refine LS restraints |
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