- PDB-5ua4: Crystal structure of A179L:Bid BH3 complex -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 5ua4
Title
Crystal structure of A179L:Bid BH3 complex
Components
5-HL
BH3-interacting domain death agonist
Keywords
APOPTOSIS / Bcl-2
Function / homology
Function and homology information
Activation and oligomerization of BAK protein / Activation, myristolyation of BID and translocation to mitochondria / Activation, translocation and oligomerization of BAX / : / suppression by virus of host autophagy / positive regulation of extrinsic apoptotic signaling pathway / host cell endoplasmic reticulum / apoptotic mitochondrial changes / positive regulation of release of cytochrome c from mitochondria / host cell mitochondrion ...Activation and oligomerization of BAK protein / Activation, myristolyation of BID and translocation to mitochondria / Activation, translocation and oligomerization of BAX / : / suppression by virus of host autophagy / positive regulation of extrinsic apoptotic signaling pathway / host cell endoplasmic reticulum / apoptotic mitochondrial changes / positive regulation of release of cytochrome c from mitochondria / host cell mitochondrion / positive regulation of intrinsic apoptotic signaling pathway / activation of cysteine-type endopeptidase activity involved in apoptotic process / regulation of apoptotic process / mitochondrial outer membrane / mitochondrion / cytosol Similarity search - Function
BH3-interacting domain death agonist / BH3 interacting domain (BID) / Apoptosis regulator, Bcl-2, BH1 motif, conserved site / Apoptosis regulator, Bcl-2 family BH1 motif signature. / Apoptosis regulator, Bcl-2, BH2 motif, conserved site / Apoptosis regulator, Bcl-2 family BH2 motif signature. / BCL (B-Cell lymphoma); contains BH1, BH2 regions / Bcl-2 family / Bcl-2, Bcl-2 homology region 1-3 / Bcl2-like ...BH3-interacting domain death agonist / BH3 interacting domain (BID) / Apoptosis regulator, Bcl-2, BH1 motif, conserved site / Apoptosis regulator, Bcl-2 family BH1 motif signature. / Apoptosis regulator, Bcl-2, BH2 motif, conserved site / Apoptosis regulator, Bcl-2 family BH2 motif signature. / BCL (B-Cell lymphoma); contains BH1, BH2 regions / Bcl-2 family / Bcl-2, Bcl-2 homology region 1-3 / Bcl2-like / Apoptosis regulator proteins, Bcl-2 family / BCL2-like apoptosis inhibitors family profile. / Bcl-2-like superfamily Similarity search - Domain/homology
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi