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Basic information
| Entry | Database: PDB / ID: 5npw | ||||||
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| Title | Structure of human ATG5-ATG16L1(ATG5BD) complex (C2) | ||||||
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Keywords | CELL CYCLE / autophagy / ATG16L1 / ATG5 | ||||||
| Function / homology | Function and homology informationotolith development / regulation of autophagosome maturation / positive regulation of viral translation / C-terminal protein lipidation / regulation of cytokine production involved in immune response / Atg8-family ligase activity / response to fluoride / Atg12-Atg5-Atg16 complex / antigen processing and presentation of endogenous antigen / negative regulation of dendrite extension ...otolith development / regulation of autophagosome maturation / positive regulation of viral translation / C-terminal protein lipidation / regulation of cytokine production involved in immune response / Atg8-family ligase activity / response to fluoride / Atg12-Atg5-Atg16 complex / antigen processing and presentation of endogenous antigen / negative regulation of dendrite extension / positive regulation of mucus secretion / vacuole-isolation membrane contact site / phagophore / negative regulation of autophagic cell death / positive regulation of stress granule assembly / ubiquitin-like protein transferase activity / cellular response to nitrosative stress / negative regulation of defense response to virus / microautophagy / ventricular cardiac muscle cell development / regulation of cilium assembly / aggrephagy / transferase complex / mucus secretion / mitochondria-associated endoplasmic reticulum membrane contact site / response to fungus / dendrite arborization / xenophagy / corpus callosum development / protein localization to phagophore assembly site / negative thymic T cell selection / phagophore assembly site membrane / piecemeal microautophagy of the nucleus / negative stranded viral RNA replication / regulation of release of sequestered calcium ion into cytosol / endolysosome membrane / cellular response to nitrogen starvation / negative regulation of cardiac muscle cell apoptotic process / negative regulation of phagocytosis / regulation of reactive oxygen species metabolic process / negative regulation of type I interferon production / axonal transport / Receptor Mediated Mitophagy / Macroautophagy / response to iron(II) ion / chaperone-mediated autophagy / heart contraction / autophagosome membrane / axoneme / blood vessel remodeling / autophagosome assembly / postsynaptic modulation of chemical synaptic transmission / regulation of postsynaptic membrane neurotransmitter receptor levels / mitophagy / protein-membrane adaptor activity / sperm midpiece / cardiac muscle cell apoptotic process / negative regulation of protein ubiquitination / positive regulation of autophagy / post-translational protein modification / autophagosome / negative regulation of innate immune response / PINK1-PRKN Mediated Mitophagy / hippocampus development / Negative regulators of DDX58/IFIH1 signaling / macroautophagy / autophagy / vasodilation / Schaffer collateral - CA1 synapse / phagocytic vesicle membrane / protein transport / chromatin organization / GTPase binding / defense response to virus / postsynapse / protein ubiquitination / response to xenobiotic stimulus / axon / innate immune response / glutamatergic synapse / protein-containing complex / identical protein binding / membrane / cytoplasm / cytosol Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 3.1 Å | ||||||
Authors | Archna, A. / Scrima, A. | ||||||
Citation | Journal: Acta Crystallogr F Struct Biol Commun / Year: 2017Title: Identification, biochemical characterization and crystallization of the central region of human ATG16L1. Authors: Archna, A. / Scrima, A. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 5npw.cif.gz | 730.8 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb5npw.ent.gz | 613.1 KB | Display | PDB format |
| PDBx/mmJSON format | 5npw.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/np/5npw ftp://data.pdbj.org/pub/pdb/validation_reports/np/5npw | HTTPS FTP |
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-Related structure data
| Related structure data | ![]() 5npvC ![]() 4gdkS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi




Homo sapiens (human)
X-RAY DIFFRACTION
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