[English] 日本語
![](img/lk-miru.gif)
- PDB-5lym: STUDIES OF MONOCLINIC HEN EGG WHITE LYSOZYME. IV. X-RAY REFINEMEN... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 5lym | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | STUDIES OF MONOCLINIC HEN EGG WHITE LYSOZYME. IV. X-RAY REFINEMENT AT 1.8 ANGSTROM RESOLUTION AND A COMPARISON OF THE VARIABLE REGIONS IN THE POLYMORPHIC FORMS | |||||||||
![]() | LYSOZYME | |||||||||
![]() | HYDROLASE (O-GLYCOSYL) | |||||||||
Function / homology | ![]() Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium ...Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Rao, S.T. / Sundaralingam, M. | |||||||||
![]() | ![]() Title: Studies of monoclinic hen egg-white lysozyme. IV. X-ray refinement at 1.8 A resolution and a comparison of the variable regions in the polymorphic forms. Authors: Rao, S.T. / Sundaralingam, M. #1: ![]() Title: X-Ray Refinement Studies on Monoclinic Hel Containing Two Independent Molecules at 1.8 Angstrom Resolution Authors: Yu, C. / Rao, S.T. / Sundaralingam, M. #2: ![]() Title: Studies of Monoclinic Hen Egg White Lysozyme. II. The Refinement at 2.5 Angstroms Resolution-Conformational Variability between the Two Independent Molecules Authors: Rao, S.T. / Hogle, J. / Sundaralingam, M. #3: ![]() Title: Studies of Monoclinic Hen Egg White Lysozyme. I. Structure Solution at 4 Angstroms Resolution and Molecular-Packing Comparisons with Tetragonal and Triclinic Lysozymes Authors: Hogle, J. / Rao, S.T. / Mallikarjunan, M. / Beddell, C. / Mcmullan, R.K. / Sundaralingam, M. #4: ![]() Title: The Structure of the Monoclinic Crystal Form of Hen Egg White Lysozyme at 2.5 Angstroms Resolution. Comparison of a Protein Structure in Several Crystalline Environments Authors: Hogle, J. | |||||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 63.8 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 47.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
2 | ![]()
| ||||||||
Unit cell |
| ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.9738, -0.1931, 0.1201), Vector: |
-
Components
#1: Protein | Mass: 14331.160 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() #2: Chemical | ChemComp-NO3 / #3: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 1.86 Å3/Da / Density % sol: 33.82 % |
---|---|
Crystal grow | *PLUS Method: other / Details: Hogle, J., (1981) Acta Cryst., B37, 591. |
-Data collection
Diffraction source | Wavelength: 1.5418 Å |
---|---|
Detector | Type: BRUKER NONIUS CAD4 / Detector: DIFFRACTOMETER |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→8 Å / Num. obs: 18822 / % possible obs: 99 % |
Reflection | *PLUS Observed criterion σ(I): 0 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 1.8→8 Å / σ(F): 3
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 19.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→8 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
|