regulation of collateral sprouting in absence of injury / Activation of caspases through apoptosome-mediated cleavage / Apoptotic cleavage of cellular proteins / SMAC, XIAP-regulated apoptotic response / Apoptosis induced DNA fragmentation / Signaling by Hippo / Caspase-mediated cleavage of cytoskeletal proteins / : / Caspase activation via Dependence Receptors in the absence of ligand / Other interleukin signaling ...regulation of collateral sprouting in absence of injury / Activation of caspases through apoptosome-mediated cleavage / Apoptotic cleavage of cellular proteins / SMAC, XIAP-regulated apoptotic response / Apoptosis induced DNA fragmentation / Signaling by Hippo / Caspase-mediated cleavage of cytoskeletal proteins / : / Caspase activation via Dependence Receptors in the absence of ligand / Other interleukin signaling / : / Pyroptosis / : / : / Apoptotic cleavage of cell adhesion proteins / Regulation of TNFR1 signaling / cysteine-type endopeptidase activity involved in apoptotic process / cellular response to antibiotic / cellular response to retinoic acid / keratinocyte differentiation / erythrocyte differentiation / neuron differentiation / cellular response to xenobiotic stimulus / peptidase activity / positive regulation of apoptotic process / apoptotic process / proteolysis 類似検索 - 分子機能
Peptidase C14 family / Rossmann fold - #1460 / Peptidase family C14A, His active site / Caspase family histidine active site. / Peptidase C14, caspase non-catalytic subunit p10 / Peptidase family C14A, cysteine active site / Caspase family cysteine active site. / Caspase family p10 domain profile. / Peptidase C14A, caspase catalytic domain / Caspase, interleukin-1 beta converting enzyme (ICE) homologues ...Peptidase C14 family / Rossmann fold - #1460 / Peptidase family C14A, His active site / Caspase family histidine active site. / Peptidase C14, caspase non-catalytic subunit p10 / Peptidase family C14A, cysteine active site / Caspase family cysteine active site. / Caspase family p10 domain profile. / Peptidase C14A, caspase catalytic domain / Caspase, interleukin-1 beta converting enzyme (ICE) homologues / Peptidase C14, p20 domain / Caspase family p20 domain profile. / : / Caspase domain / Caspase-like domain superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta 類似検索 - ドメイン・相同性
Ac-Asp-Glu-Val-Asp-CMK / Caspase 3, apoptosis-related cysteine peptidase a / Caspase 3, apoptosis-related cysteine peptidase a 類似検索 - 構成要素
温度: 291 K / 手法: 蒸気拡散法 / pH: 8.5 詳細: Crystals were obtained at 18 deg. C by the hanging drop vapor diffusion method using 4 uL drops that contained equal volumes of protein and reservoir solutions over a 0.5 mL solution of 100 ...詳細: Crystals were obtained at 18 deg. C by the hanging drop vapor diffusion method using 4 uL drops that contained equal volumes of protein and reservoir solutions over a 0.5 mL solution of 100 mM sodium citrate, pH 5.1, 17.5% PEG 6000, 10 mM DTT, and 3 mM NaN3. Crystals appeared within 14 days and were briefly immersed in cryogenic solution containing 10% 2-methylpentane-2,4-diol and 90% reservoir solution.
モノクロメーター: Insertion Device / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 1 Å / 相対比: 1
反射
解像度: 2.282→33.918 Å / Num. obs: 27818 / % possible obs: 98.8 % / 冗長度: 5.7 % / Net I/σ(I): 3.1
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解析
ソフトウェア
名称
バージョン
分類
PHENIX
1.10.1_2155
精密化
HKL-2000
データ削減
HKL-2000
データスケーリング
PHENIX
位相決定
精密化
構造決定の手法: 分子置換 / 解像度: 2.28→33.92 Å / SU ML: 0.28 / 交差検証法: THROUGHOUT / σ(F): 1.34 / 位相誤差: 24.44 詳細: Authors state that there is a fundamental incompatibility in the naming of the inhibitor structure and the refinement program cannot be made to establish a bond that exists between the ...詳細: Authors state that there is a fundamental incompatibility in the naming of the inhibitor structure and the refinement program cannot be made to establish a bond that exists between the inhibitor and the protein at the active site cysteine.