登録情報 | データベース: PDB / ID: 5j3t |
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タイトル | Crystal structure of S. pombe Dcp2:Dcp1:Edc1 mRNA decapping complex |
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要素 | - Edc1
- mRNA decapping complex subunit 2
- mRNA-decapping enzyme subunit 1
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キーワード | HYDROLASE / decapping / mRNA decay / EVH1 / Nudix |
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機能・相同性 | 機能・相同性情報
mRNA phosphatase activator activity / : / RNA decapping complex / mRNA methylguanosine-cap decapping / 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity / deadenylation-independent decapping of nuclear-transcribed mRNA / mRNA 5'-diphosphatase activity / 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity / 加水分解酵素 / mRNA cap binding ...mRNA phosphatase activator activity / : / RNA decapping complex / mRNA methylguanosine-cap decapping / 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity / deadenylation-independent decapping of nuclear-transcribed mRNA / mRNA 5'-diphosphatase activity / 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity / 加水分解酵素 / mRNA cap binding / deadenylation-dependent decapping of nuclear-transcribed mRNA / nuclear-transcribed mRNA catabolic process, nonsense-mediated decay / meiotic cell cycle / P-body / mRNA processing / cytoplasmic stress granule / manganese ion binding / single-stranded RNA binding / mRNA binding / magnesium ion binding / ATP binding / nucleus / cytoplasm / cytosol類似検索 - 分子機能 Proline-rich nuclear receptor coactivator motif / mRNA-decapping enzyme subunit 1 / Dcp1-like decapping family / mRNA decapping protein 2, Box A domain / mRNA decapping protein 2, Box A domain superfamily / mRNA decapping enzyme 2 , NUDIX hydrolase domain / Dcp2, box A domain / Dcp2, box A domain / NUDIX hydrolase, conserved site / Nudix box signature. ...Proline-rich nuclear receptor coactivator motif / mRNA-decapping enzyme subunit 1 / Dcp1-like decapping family / mRNA decapping protein 2, Box A domain / mRNA decapping protein 2, Box A domain superfamily / mRNA decapping enzyme 2 , NUDIX hydrolase domain / Dcp2, box A domain / Dcp2, box A domain / NUDIX hydrolase, conserved site / Nudix box signature. / Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) / NUDIX domain / PH-domain like / Nudix hydrolase domain profile. / NUDIX hydrolase domain / NUDIX hydrolase-like domain superfamily / PH-like domain superfamily / Roll / Mainly Beta類似検索 - ドメイン・相同性 FORMIC ACID / mRNA decapping complex subunit 2 / Uncharacterized protein C18G6.09c / mRNA-decapping enzyme subunit 1類似検索 - 構成要素 |
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生物種 | ![](img/tx_yeast.gif) Schizosaccharomyces pombe (分裂酵母) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 1.6 Å |
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データ登録者 | Valkov, E. / Muthukumar, S. / Chang, C.T. / Jonas, S. / Weichenrieder, O. / Izaurralde, E. |
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引用 | ジャーナル: Nat.Struct.Mol.Biol. / 年: 2016 タイトル: Structure of the Dcp2-Dcp1 mRNA-decapping complex in the activated conformation. 著者: Valkov, E. / Muthukumar, S. / Chang, C.T. / Jonas, S. / Weichenrieder, O. / Izaurralde, E. |
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履歴 | 登録 | 2016年3月31日 | 登録サイト: RCSB / 処理サイト: PDBE |
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改定 1.0 | 2016年5月18日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2016年6月1日 | Group: Database references |
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改定 1.2 | 2016年6月15日 | Group: Database references |
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改定 1.3 | 2024年1月10日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr2_auth_seq_id |
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Remark 650 | HELIX DETERMINATION METHOD: AUTHOR PROVIDED. |
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Remark 700 | SHEET DETERMINATION METHOD: AUTHOR PROVIDED. |
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