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Open data
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Basic information
Entry | Database: PDB / ID: 5hu2 | ||||||
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Title | Sugar kinases from Synechococcus elongatus PCC7942-T11A | ||||||
![]() | Probable sugar kinase | ||||||
![]() | TRANSFERASE / sugar kinases / Synechococcus elongatus PCC7942-T11A / mutation | ||||||
Function / homology | ![]() D-ribulokinase / D-ribulokinase activity / glycerol-3-phosphate biosynthetic process / glycerol kinase activity / glycerol metabolic process / triglyceride metabolic process / ATP binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Xie, Y. / Li, M. / Chang, W. | ||||||
![]() | ![]() Title: Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana Authors: Xie, Y. / Li, M. / Chang, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 93.8 KB | Display | ![]() |
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PDB format | ![]() | 69.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 414.1 KB | Display | ![]() |
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Full document | ![]() | 415.8 KB | Display | |
Data in XML | ![]() | 16.8 KB | Display | |
Data in CIF | ![]() | 23.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5htjC ![]() 5htnC ![]() 5htpC ![]() 5htrC ![]() 5htvC ![]() 5htxC ![]() 5htyC ![]() 5huxC ![]() 5hv7C C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 47277.211 Da / Num. of mol.: 1 / Mutation: T11A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: PCC 7942 / Gene: Synpcc7942_2462 / Plasmid: PET28a / Production host: ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.25 Å3/Da / Density % sol: 45.25 % |
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Crystal grow | Temperature: 281 K / Method: vapor diffusion, sitting drop / pH: 6.5 Details: 0.1M BIS-TRIS pH 6.5, 20% w/v Polyethylene glycol monomethyl ether 5000 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU SATURN 944 / Detector: CCD / Date: Dec 8, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54178 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→50 Å / Num. obs: 12792 / % possible obs: 99.9 % / Redundancy: 7.2 % / Rmerge(I) obs: 0.119 / Net I/σ(I): 15.35 |
Reflection shell | Resolution: 2.6→2.69 Å / Redundancy: 7 % / Rmerge(I) obs: 0.444 / Mean I/σ(I) obs: 4.26 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→33.605 Å
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Refine LS restraints |
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LS refinement shell |
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