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- PDB-5hb8: Crystal structure of Chaetomium thermophilum Nup53 RRM (space gro... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5hb8 | ||||||||||||||||||||||||||||||
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Title | Crystal structure of Chaetomium thermophilum Nup53 RRM (space group P3121) | ||||||||||||||||||||||||||||||
![]() | Nucleoporin NUP53 | ||||||||||||||||||||||||||||||
![]() | TRANSPORT PROTEIN / Nucleocytoplasmic transport / protein transport | ||||||||||||||||||||||||||||||
Function / homology | mRNA transport / nuclear pore / protein transport / nuclear membrane / Nucleotide-binding alpha-beta plait domain superfamily / SUCCINIC ACID / Nucleoporin NUP53![]() | ||||||||||||||||||||||||||||||
Biological species | ![]() | ||||||||||||||||||||||||||||||
Method | ![]() ![]() | ||||||||||||||||||||||||||||||
![]() | Lin, D.H. / Stuwe, T. / Hoelz, A. | ||||||||||||||||||||||||||||||
Funding support | ![]() ![]() ![]()
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![]() | ![]() Title: Architecture of the symmetric core of the nuclear pore. Authors: Lin, D.H. / Stuwe, T. / Schilbach, S. / Rundlet, E.J. / Perriches, T. / Mobbs, G. / Fan, Y. / Thierbach, K. / Huber, F.M. / Collins, L.N. / Davenport, A.M. / Jeon, Y.E. / Hoelz, A. | ||||||||||||||||||||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 281.9 KB | Display | ![]() |
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PDB format | ![]() | 234.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 5haxC ![]() 5hayC ![]() 5hazC ![]() 5hb0C ![]() 5hb1C ![]() 5hb2C ![]() 5hb3C ![]() 5hb4C ![]() 5hb5C ![]() 5hb6C ![]() 5hb7C C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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4 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14342.988 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: DSM 1495 / CBS 144.50 / IMI 039719 / Gene: NUP53, CTHT_0012410 / Production host: ![]() ![]() #2: Chemical | ChemComp-SIN / #3: Chemical | ChemComp-GOL / #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.6 Å3/Da / Density % sol: 52.76 % |
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Crystal grow | Temperature: 294 K / Method: vapor diffusion, hanging drop / Details: 4 % Tacsimate (pH 4.1), 15 % (w/v) PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Mar 17, 2012 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→50 Å / Num. obs: 60735 / % possible obs: 91.1 % / Redundancy: 35.7 % / Net I/σ(I): 37.3 |
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Processing
Software |
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Refinement | Resolution: 1.7→47.33 Å / SU ML: 0.19 / Cross valid method: THROUGHOUT / σ(F): 1.35 / Phase error: 22.23 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.7→47.33 Å
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Refine LS restraints |
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LS refinement shell |
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