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Open data
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Basic information
Entry | Database: PDB / ID: 5f0u | ||||||
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Title | Crystal structure of Gold binding protein | ||||||
![]() | Putative copper chaperone | ||||||
![]() | METAL BINDING PROTEIN / Silver binding protein | ||||||
Function / homology | Alpha-Beta Plaits - #100 / Alpha-Beta Plaits / 2-Layer Sandwich / Alpha Beta / SILVER ION / : ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Wei, W. / Wang, F. / Zhao, J. | ||||||
![]() | ![]() Title: Structure of tetrasilver bound to GolB at 1.70 Angstroms resolution Authors: Wei, W. / Zhao, J. / Wang, F. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 27.4 KB | Display | ![]() |
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PDB format | ![]() | 16.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 424.2 KB | Display | ![]() |
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Full document | ![]() | 424.2 KB | Display | |
Data in XML | ![]() | 5.1 KB | Display | |
Data in CIF | ![]() | 6.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 6927.869 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: S5-487 / Gene: LTSEGIV_0549 / Plasmid: pET28a / Production host: ![]() ![]() | ||
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#2: Chemical | ChemComp-AG / #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.44 Å3/Da / Density % sol: 49.53 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 2.0 M Ammonium citrate tribasic, 0.1 M BIS-TRIS propane |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV++ / Detector: IMAGE PLATE / Date: Jul 18, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5419 Å / Relative weight: 1 |
Reflection | Resolution: 1.68→50 Å / Num. obs: 8466 / % possible obs: 98 % / Redundancy: 11.6 % / Net I/σ(I): 24.31 |
Reflection shell | Resolution: 1.68→1.71 Å / Redundancy: 2.1 % / Mean I/σ(I) obs: 3.756 |
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Processing
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Refinement | Resolution: 1.68→32.13 Å / Cor.coef. Fo:Fc: 0.965 / Cor.coef. Fo:Fc free: 0.959 / SU B: 2.23 / SU ML: 0.073 / Cross valid method: THROUGHOUT / ESU R: 0.105 / ESU R Free: 0.103 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 31.294 Å2
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Refinement step | Cycle: 1 / Resolution: 1.68→32.13 Å
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Refine LS restraints |
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