MONO-TRANS, OCTA-CIS DECAPRENYL-PHOSPHATE / Chem-MPG / PHOSPHOCHOLINE / PHOSPHATE ION / 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family Similarity search - Component
Biological species
Cupriavidus metallidurans (bacteria)
Method
X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.7 Å
Method to determine structure: SAD / Resolution: 2.7→47.405 Å / SU ML: 0.43 / Cross valid method: THROUGHOUT / σ(F): 1.33 / Phase error: 30.52 / Stereochemistry target values: ML Details: Author's note for MPG: Densities corresponding to partially ordered monoolein molecules (1-MONOOLEOYL-RAC-GLYCEROL) were modelled using alkane chains of varying length (n=4-14). We cannot ...Details: Author's note for MPG: Densities corresponding to partially ordered monoolein molecules (1-MONOOLEOYL-RAC-GLYCEROL) were modelled using alkane chains of varying length (n=4-14). We cannot exclude that a small subset of these densities may correspond to partially ordered detergent or poly-prenyl lipid molecules. For DSL: Only the last three prenyl groups of decaprenyl phosphate appear ordered and have been modelled in the structure.
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2597
1045
5.23 %
Random selection
Rwork
0.2125
35268
-
-
obs
0.2151
20240
98.49 %
-
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
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