Entry Database : PDB / ID : 5dl0 Structure visualization Downloads & linksTitle Crystal structure of glucosidase II alpha subunit (Glc1Man2-bound from) ComponentsAlpha glucosidase-like protein Details Keywords HYDROLASE / ENDOPLASMIC RETICULUM / GLYCOSIDE HYDROLASE / GLYCOSYLATIONFunction / homology Function and homology informationFunction Domain/homology Component
glucosidase II complex / alpha-glucosidase activity / alpha-glucosidase / N-glycan processing / carbohydrate binding / carbohydrate metabolic process Similarity search - Function Domain of unknown function DUF5110 / Domain of unknown function (DUF5110) / Glycosyl hydrolases family 31, active site / Glycosyl hydrolases family 31 active site. / Glycoside hydrolase family 31, N-terminal domain / Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain / : / Glycosyl hydrolase family 31 C-terminal domain / Glycoside hydrolase family 31 / Glycosyl hydrolases family 31 TIM-barrel domain ... Domain of unknown function DUF5110 / Domain of unknown function (DUF5110) / Glycosyl hydrolases family 31, active site / Glycosyl hydrolases family 31 active site. / Glycoside hydrolase family 31, N-terminal domain / Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain / : / Glycosyl hydrolase family 31 C-terminal domain / Glycoside hydrolase family 31 / Glycosyl hydrolases family 31 TIM-barrel domain / Galactose mutarotase-like domain superfamily / Glycosyl hydrolase, all-beta / Glycoside hydrolase superfamily Similarity search - Domain/homologyBiological species Chaetomium thermophilum (fungus)Method X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution : 2.3 Å DetailsAuthors Satoh, T. / Toshimori, T. / Yan, G. / Yamaguchi, T. / Kato, K. Funding support Japan, 2items Details Hide detailsOrganization Grant number Country JSPS/MEXT 24770102, 25121730 to T.S. and 15H02491, 25102008, 24249002 to K.K. Japan PRESTO/JST 13417569 to T.S. Japan
CitationJournal : Sci Rep / Year : 2016Title : Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.Authors : Satoh, T. / Toshimori, T. / Yan, G. / Yamaguchi, T. / Kato, K. History Deposition Sep 4, 2015 Deposition site : RCSB / Processing site : PDBJRevision 1.0 Jan 27, 2016 Provider : repository / Type : Initial releaseRevision 1.1 Feb 17, 2016 Group : Database referencesRevision 1.2 Feb 19, 2020 Group : Data collection / Derived calculations / Category : chem_comp / diffrn_source / pdbx_struct_oper_listItem : _chem_comp.type / _diffrn_source.pdbx_synchrotron_site / _pdbx_struct_oper_list.symmetry_operationRevision 2.0 Jul 29, 2020 Group : Atomic model / Data collection ... Atomic model / Data collection / Derived calculations / Structure summary Category : atom_site / chem_comp ... atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_struct_mod_residue / pdbx_struct_special_symmetry / struct_asym / struct_conn / struct_site / struct_site_gen Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_mod_residue.auth_asym_id / _pdbx_struct_mod_residue.auth_seq_id / _pdbx_struct_mod_residue.label_asym_id / _pdbx_struct_special_symmetry.label_asym_id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_value_order / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id Description : Carbohydrate remediation / Provider : repository / Type : Remediation
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