- PDB-5cn2: Crystal structure of yeast GGA1_GAE domain-C2221 -
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IDまたはキーワード:
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基本情報
登録情報
データベース: PDB / ID: 5cn2
タイトル
Crystal structure of yeast GGA1_GAE domain-C2221
要素
ADP-ribosylation factor-binding protein GGA1
キーワード
PROTEIN TRANSPORT / Vesicular transport / GGA1_GAE / accessory protein
機能・相同性
機能・相同性情報
Golgi to endosome transport / Golgi to vacuole transport / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / phosphatidylinositol binding / ubiquitin binding / trans-Golgi network / cytosol 類似検索 - 分子機能
Gamma-adaptin ear (GAE) domain / N-terminal extension of GAT domain / N-terminal extension of GAT domain / GAT domain / GAT domain superfamily / GAT domain / GAT domain profile. / VHS domain / VHS domain / VHS domain profile. ...Gamma-adaptin ear (GAE) domain / N-terminal extension of GAT domain / N-terminal extension of GAT domain / GAT domain / GAT domain superfamily / GAT domain / GAT domain profile. / VHS domain / VHS domain / VHS domain profile. / Domain present in VPS-27, Hrs and STAM / Gamma-adaptin ear (GAE) domain / Gamma-adaptin ear (GAE) domain profile. / Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain / Adaptin C-terminal domain / Adaptin C-terminal domain / ENTH/VHS / Clathrin adaptor, appendage, Ig-like subdomain superfamily / Immunoglobulin-like / Sandwich / Mainly Beta 類似検索 - ドメイン・相同性
ADP-ribosylation factor-binding protein GGA1 類似検索 - 構成要素
解像度: 2.25→48.63 Å / Cor.coef. Fo:Fc: 0.941 / Cor.coef. Fo:Fc free: 0.921 / SU B: 7.249 / SU ML: 0.177 / 交差検証法: THROUGHOUT / ESU R: 0.301 / ESU R Free: 0.232 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.27016
653
4.9 %
RANDOM
Rwork
0.23128
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obs
0.23317
12630
99.65 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK