- PDB-5cn1: Crystal structure of yeast GGA1_GAE domain-P21 -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5cn1
Title
Crystal structure of yeast GGA1_GAE domain-P21
Components
ADP-ribosylation factor-binding protein GGA1
Keywords
PROTEIN TRANSPORT / Vesicular transport / GGA1_GAE / accessory protein
Function / homology
Function and homology information
Golgi to endosome transport / Golgi to vacuole transport / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / phosphatidylinositol binding / ubiquitin binding / trans-Golgi network / cytosol Similarity search - Function
Gamma-adaptin ear (GAE) domain / N-terminal extension of GAT domain / N-terminal extension of GAT domain / GAT domain / GAT domain superfamily / GAT domain / GAT domain profile. / VHS domain / VHS domain / VHS domain profile. ...Gamma-adaptin ear (GAE) domain / N-terminal extension of GAT domain / N-terminal extension of GAT domain / GAT domain / GAT domain superfamily / GAT domain / GAT domain profile. / VHS domain / VHS domain / VHS domain profile. / Domain present in VPS-27, Hrs and STAM / Gamma-adaptin ear (GAE) domain / Gamma-adaptin ear (GAE) domain profile. / Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain / Adaptin C-terminal domain / Adaptin C-terminal domain / ENTH/VHS / Clathrin adaptor, appendage, Ig-like subdomain superfamily / Immunoglobulin-like / Sandwich / Mainly Beta Similarity search - Domain/homology
A: ADP-ribosylation factor-binding protein GGA1 B: ADP-ribosylation factor-binding protein GGA1 C: ADP-ribosylation factor-binding protein GGA1 D: ADP-ribosylation factor-binding protein GGA1
Resolution: 2.31→42.48 Å / Cor.coef. Fo:Fc: 0.946 / Cor.coef. Fo:Fc free: 0.919 / SU B: 7.711 / SU ML: 0.188 / Cross valid method: THROUGHOUT / ESU R: 0.352 / ESU R Free: 0.259 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.26972
1119
5.1 %
RANDOM
Rwork
0.21235
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obs
0.21519
20721
99.03 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK