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- PDB-5bwk: 6.0 A Crystal structure of a Get3-Get4-Get5 intermediate complex ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5bwk | ||||||
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Title | 6.0 A Crystal structure of a Get3-Get4-Get5 intermediate complex from S.cerevisiae | ||||||
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![]() | Hydrolase/Transport / Tail-anchored targeting / ATPase / electrostatic interaction / Hydrolase-Transport complex | ||||||
Function / homology | ![]() cell morphogenesis involved in conjugation with cellular fusion / GET complex / pheromone-dependent signal transduction involved in conjugation with cellular fusion / TRC complex / tail-anchored membrane protein insertion into ER membrane / Hydrolases; Acting on acid anhydrides / protein insertion into ER membrane / post-translational protein targeting to endoplasmic reticulum membrane / response to arsenic-containing substance / retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum ...cell morphogenesis involved in conjugation with cellular fusion / GET complex / pheromone-dependent signal transduction involved in conjugation with cellular fusion / TRC complex / tail-anchored membrane protein insertion into ER membrane / Hydrolases; Acting on acid anhydrides / protein insertion into ER membrane / post-translational protein targeting to endoplasmic reticulum membrane / response to arsenic-containing substance / retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum / response to metal ion / protein folding chaperone / vesicle-mediated transport / guanyl-nucleotide exchange factor activity / cytoplasmic stress granule / unfolded protein binding / protein-folding chaperone binding / response to heat / endoplasmic reticulum membrane / Golgi apparatus / endoplasmic reticulum / ATP hydrolysis activity / ATP binding / identical protein binding / nucleus / metal ion binding / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Gristick, H.B. / Chartron, J.W. / Clemons, W.M. | ||||||
![]() | ![]() Title: Mechanism of Assembly of a Substrate Transfer Complex during Tail-anchored Protein Targeting. Authors: Gristick, H.B. / Rome, M.E. / Chartron, J.W. / Rao, M. / Hess, S. / Shan, S.O. / Clemons, W.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 890.4 KB | Display | ![]() |
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PDB format | ![]() | 712.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 609.8 KB | Display | ![]() |
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Full document | ![]() | 820.8 KB | Display | |
Data in XML | ![]() | 123.9 KB | Display | |
Data in CIF | ![]() | 174.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5bw8C ![]() 3a37S ![]() 3lkuS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 41576.848 Da / Num. of mol.: 8 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: RM11-1a / Gene: GET3, SCRG_00595 / Production host: ![]() ![]() References: UniProt: B3LGZ3, UniProt: Q12154*PLUS, Hydrolases; Acting on acid anhydrides #2: Protein | Mass: 37245.977 Da / Num. of mol.: 8 / Fragment: UNP residues 11-311 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: ATCC 204508 / S288c / Gene: GET4, YOR164C, O3580 / Production host: ![]() ![]() #3: Protein | Mass: 6305.339 Da / Num. of mol.: 8 / Fragment: UNP residues 1-56 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Strain: ATCC 204508 / S288c / Gene: MDY2, GET5, TMA24, YOL111C / Production host: ![]() ![]() #4: Chemical | ChemComp-ZN / |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.81 Å3/Da / Density % sol: 56.25 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / Details: 12% PEG 3350 and 0.1 M Na malonate (pH 5.0) |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: PSI PILATUS 6M / Detector: PIXEL / Date: Jun 20, 2010 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9795 Å / Relative weight: 1 |
Reflection | Resolution: 6→30 Å / Num. obs: 18388 / % possible obs: 96.3 % / Redundancy: 3.2 % / Rmerge(I) obs: 0.06 / Net I/σ(I): 8.9 |
Reflection shell | Resolution: 6→6.6 Å / Redundancy: 3.4 % / Rmerge(I) obs: 0.78 / Mean I/σ(I) obs: 1.4 / % possible all: 98.7 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 3A37 and 3LKU Resolution: 6→30 Å / σ(F): 0
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Solvent computation | Bsol: 295.14 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 386.38 Å2 / Biso mean: 361.6852 Å2 / Biso min: 20 Å2
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Refinement step | Cycle: final / Resolution: 6→30 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 10
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