Entry Database : PDB / ID : 5b55 Structure visualization Downloads & linksTitle Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) D232N mutant in complexed with alpha-aminoacrylate intermediate: lysine-dimethylated form ComponentsCysteine synthase Details Keywords TRANSFERASE / Pyridoxal 5'-phosphate dependent enzyme / alpha-AminoacrylateFunction / homology Function and homology informationFunction Domain/homology Component
cysteine synthase / cystathionine beta-synthase activity / cysteine synthase activity / L-cysteine desulfhydrase activity / cysteine biosynthetic process from serine / cytoplasm Similarity search - Function Rossmann fold - #1100 / Pyridoxal-phosphate dependent enzyme / Tryptophan synthase beta subunit-like PLP-dependent enzyme / Pyridoxal-phosphate dependent enzyme / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homologyBiological species Fusobacterium nucleatum subsp. nucleatum strain ATCC 25586 (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.14 Å DetailsAuthors Kezuka, Y. / Yoshida, Y. / Nonaka, T. Funding support Japan, 2items Details Hide detailsOrganization Grant number Country Japan Society for the Promotion of Science 21791810 Japan Japan Society for the Promotion of Science 23792130 Japan
CitationJournal : Biochem. J. / Year : 2018Title : Structural insights into the catalytic mechanism of cysteine (hydroxyl) lyase from the hydrogen sulfide-producing oral pathogen,Fusobacterium nucleatum.Authors : Kezuka, Y. / Ishida, T. / Yoshida, Y. / Nonaka, T. History Deposition Apr 22, 2016 Deposition site : PDBJ / Processing site : PDBJRevision 1.0 Apr 26, 2017 Provider : repository / Type : Initial releaseRevision 1.1 Apr 3, 2019 Group : Data collection / Database references / Category : citation / citation_author / diffrn_sourceItem : _citation.country / _citation.journal_abbrev ... _citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _diffrn_source.pdbx_synchrotron_site Revision 1.2 Nov 8, 2023 Group : Data collection / Database references / Refinement descriptionCategory : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ncs_dom_lim Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id
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