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- PDB-5anp: CRYSTAL STRUCTURE OF THE BA41 PROTEIN FROM BIZIONIA ARGENTINENSIS -
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Open data
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Basic information
Entry | Database: PDB / ID: 5anp | ||||||
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Title | CRYSTAL STRUCTURE OF THE BA41 PROTEIN FROM BIZIONIA ARGENTINENSIS | ||||||
![]() | BA41 | ||||||
![]() | UNKNOWN FUNCTION / ANTARCTIC BACTERIA / BA41 | ||||||
Function / homology | Diaminopimelate Epimerase; Chain A, domain 1 - #50 / TPM domain / TPM domain / Diaminopimelate Epimerase; Chain A, domain 1 / membrane => GO:0016020 / Roll / Alpha Beta / TPM domain-containing protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Otero, L.H. / Cerutti, M.L. / Goldbaum, F.A. / Klinke, S. | ||||||
![]() | ![]() Title: Structural and functional characterization of a cold adapted TPM-domain with ATPase/ADPase activity. Authors: Cerutti, M.L. / Otero, L.H. / Smal, C. / Pellizza, L. / Goldbaum, F.A. / Klinke, S. / Aran, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 76.7 KB | Display | ![]() |
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PDB format | ![]() | 56.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 424.5 KB | Display | ![]() |
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Full document | ![]() | 426 KB | Display | |
Data in XML | ![]() | 15 KB | Display | |
Data in CIF | ![]() | 22.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2kw7S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 29161.879 Da / Num. of mol.: 2 / Fragment: TPM DOMAIN, UNP RESIDUES 29-178 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.82 Å3/Da / Density % sol: 32.53 % / Description: NONE |
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Crystal grow | pH: 6.1 Details: 23% PEG 5000 MME, 2% PEG 400, 0.1M IMIDAZOLE PH 6.1 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Details: KIRKPATRICK-BAEZ PAIR OF BI-MORPH MIRRORS |
Radiation | Monochromator: CHANNEL CUT CRYOGENICALLY COOLED MONOCROMATOR CRYSTAL Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.82656 Å / Relative weight: 1 |
Reflection | Resolution: 1.4→34.43 Å / Num. obs: 46549 / % possible obs: 99.5 % / Observed criterion σ(I): 2 / Redundancy: 4.6 % / Biso Wilson estimate: 13.43 Å2 / Rmerge(I) obs: 0.08 / Net I/σ(I): 11.6 |
Reflection shell | Resolution: 1.4→1.42 Å / Redundancy: 4.6 % / Rmerge(I) obs: 0.79 / Mean I/σ(I) obs: 2.2 / % possible all: 99.5 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 2KW7 Resolution: 1.4→34.43 Å / Cor.coef. Fo:Fc: 0.9569 / Cor.coef. Fo:Fc free: 0.9535 / SU R Cruickshank DPI: 0.065 / Cross valid method: THROUGHOUT / σ(F): 0 / SU R Blow DPI: 0.067 / SU Rfree Blow DPI: 0.063 / SU Rfree Cruickshank DPI: 0.062
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Displacement parameters | Biso mean: 17.29 Å2
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Refine analyze | Luzzati coordinate error obs: 0.154 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.4→34.43 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.4→1.44 Å / Total num. of bins used: 20
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