Entry | Database: PDB / ID: 5a5a |
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Title | The structure of GH101 E796Q mutant from Streptococcus pneumoniae TIGR4 in complex with PNP-T-antigen |
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Components | ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE |
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Keywords | HYDROLASE / GLYCOSIDE HYDROLASE FAMILY 101 / GH101 / T-ANTIGEN / MUCIN DEGRADATION |
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Function / homology | Function and homology information
endo-alpha-N-acetylgalactosaminidase / mucinaminylserine mucinaminidase activity / glycopeptide alpha-N-acetylgalactosaminidase activity / metabolic process / carbohydrate binding / extracellular region / metal ion bindingSimilarity search - Function : / : / Endo-alpha-N-acetylgalactosaminidase, helical bundle domain / Endo-alpha-N-acetylgalactosaminidase, domain 5 / Glycosyl hydrolase 101, beta-sandwich domain / Galactose-binding domain-like / Endo-alpha-N-acetylgalactosaminidase, N-terminal / Galactose mutarotase-like fold domain / Endo-alpha-N-acetylgalactosaminidase / Glycosyl hydrolase 101 beta sandwich domain ...: / : / Endo-alpha-N-acetylgalactosaminidase, helical bundle domain / Endo-alpha-N-acetylgalactosaminidase, domain 5 / Glycosyl hydrolase 101, beta-sandwich domain / Galactose-binding domain-like / Endo-alpha-N-acetylgalactosaminidase, N-terminal / Galactose mutarotase-like fold domain / Endo-alpha-N-acetylgalactosaminidase / Glycosyl hydrolase 101 beta sandwich domain / Galactose-binding domain-like / Endo-alpha-N-acetylgalactosaminidase N-terminal domain / Galactose mutarotase-like fold domain / Endo-alpha-N-acetylgalactosaminidase / Beta-galactosidase; Chain A, domain 5 - #10 / Glycoside hydrolase-type carbohydrate-binding / YSIRK type signal peptide / F5/8 type C domain / Coagulation factor 5/8 C-terminal domain / YSIRK Gram-positive signal peptide / Beta-galactosidase; Chain A, domain 5 / LPXTG cell wall anchor motif / Gram-positive cocci surface proteins LPxTG motif profile. / LPXTG cell wall anchor domain / Galactose-binding domain-like / Golgi alpha-mannosidase II / Glycosyl hydrolase, all-beta / Galactose-binding-like domain superfamily / Distorted Sandwich / Glycosidases / Jelly Rolls / TIM Barrel / Alpha-Beta Barrel / Immunoglobulin-like / Sandwich / Mainly Beta / Alpha BetaSimilarity search - Domain/homology |
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Biological species | STREPTOCOCCUS PNEUMONIAE (bacteria) |
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Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 1.75 Å |
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Authors | Gregg, K.J. / Suits, M.D.L. / Deng, L. / Vocadlo, D.J. / Boraston, A.B. |
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Citation | Journal: J.Biol.Chem. / Year: 2015 Title: Structural Analysis of a Family 101 Glycoside Hydrolase in Complex with Carbohydrates Reveals Insights Into its Mechanism. Authors: Gregg, K.J. / Suits, M.D.L. / Deng, L. / Vocadlo, D.J. / Boraston, A.B. |
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History | Deposition | Jun 16, 2015 | Deposition site: PDBE / Processing site: PDBE |
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Revision 1.0 | Sep 2, 2015 | Provider: repository / Type: Initial release |
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Revision 1.1 | Sep 9, 2015 | Group: Database references |
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Revision 1.2 | Oct 28, 2015 | Group: Database references |
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Revision 2.0 | Jul 29, 2020 | Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Derived calculations / Other / Structure summary Category: atom_site / chem_comp ...atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_database_status / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_struct_conn_angle / pdbx_struct_sheet_hbond / pdbx_struct_special_symmetry / pdbx_unobs_or_zero_occ_atoms / struct_asym / struct_conf / struct_conn / struct_conn_type / struct_sheet / struct_sheet_order / struct_sheet_range / struct_site / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_alt_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.occupancy / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_database_status.status_code_sf / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _pdbx_struct_special_symmetry.label_asym_id Description: Carbohydrate remediation / Provider: repository / Type: Remediation |
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