Entry | Database: PDB / ID: 4u01 |
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Title | HCV NS3/4A serine protease in complex with 6570 |
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Components | - NS4A protein
- Non-structural 3 protease
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Keywords | HYDROLASE / HVC / NS3/4A protease / drug design / PROTEROS BIOSTRUCTURES GMBH |
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Function / homology | Function and homology information
positive stranded viral RNA replication / virion component => GO:0044423 / hepacivirin / host cell mitochondrial membrane / host cell lipid droplet / symbiont-mediated suppression of host TRAF-mediated signal transduction / transformation of host cell by virus / symbiont-mediated perturbation of host cell cycle G1/S transition checkpoint / symbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT1 activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity ...positive stranded viral RNA replication / virion component => GO:0044423 / hepacivirin / host cell mitochondrial membrane / host cell lipid droplet / symbiont-mediated suppression of host TRAF-mediated signal transduction / transformation of host cell by virus / symbiont-mediated perturbation of host cell cycle G1/S transition checkpoint / symbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT1 activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity / viral process / serine-type peptidase activity / viral genome replication / SH3 domain binding / nucleoside-triphosphate phosphatase / protein complex oligomerization / monoatomic ion channel activity / viral nucleocapsid / clathrin-dependent endocytosis of virus by host cell / membrane => GO:0016020 / Hydrolases; Acting on peptide bonds (peptidases); Cysteine endopeptidases / RNA helicase activity / host cell endoplasmic reticulum membrane / host cell perinuclear region of cytoplasm / symbiont-mediated suppression of host type I interferon-mediated signaling pathway / RNA helicase / ribonucleoprotein complex / induction by virus of host autophagy / RNA-directed RNA polymerase / viral RNA genome replication / cysteine-type endopeptidase activity / serine-type endopeptidase activity / RNA-dependent RNA polymerase activity / virus-mediated perturbation of host defense response / fusion of virus membrane with host endosome membrane / viral envelope / host cell nucleus / virion attachment to host cell / host cell plasma membrane / structural molecule activity / virion membrane / ATP hydrolysis activity / protein-containing complex / proteolysis / RNA binding / zinc ion binding / ATP binding / identical protein binding / membraneSimilarity search - Function Thrombin, subunit H - #120 / : / Hepatitis C virus core protein, chain A superfamily / Hepatitus C virus, Non-structural 5a protein, C-terminal / Hepatitis C virus NS5A, 1B domain superfamily / Hepatitis C virus non-structural protein NS2, C-terminal domain / Hepatitis C virus non-structural protein NS2, N-terminal domain / Hepatitis C virus non-structural protein NS2 / HCV NS5a protein C-terminal region / Hepatitis C virus, Non-structural protein NS4b ...Thrombin, subunit H - #120 / : / Hepatitis C virus core protein, chain A superfamily / Hepatitus C virus, Non-structural 5a protein, C-terminal / Hepatitis C virus NS5A, 1B domain superfamily / Hepatitis C virus non-structural protein NS2, C-terminal domain / Hepatitis C virus non-structural protein NS2, N-terminal domain / Hepatitis C virus non-structural protein NS2 / HCV NS5a protein C-terminal region / Hepatitis C virus, Non-structural protein NS4b / Hepatitis C virus, Core protein, N-terminal / Hepatitis C virus non-structural protein NS4b / Hepatitis C virus capsid protein / Hepatitis C virus, Non-structural protein NS2 / Hepatitis C virus, Non-structural 5a protein / Hepatitis C virus, Non-structural 5a protein, domain 1a / Hepatitis C virus non-structural 5a, 1B domain / NS5A domain 1a superfamily / Hepatitis C virus non-structural 5a protein membrane anchor / Hepatitis C virus non-structural 5a zinc finger domain / Hepatitis C virus non-structural 5a domain 1b / Hepacivirus nonstructural protein 2 (NS2) protease domain profile. / Hepatitis C virus, Non-structural protein NS4a / Hepatitis C virus non-structural protein NS4a / Hepatitis C virus, Core protein, C-terminal / Hepatitis C virus core protein / Hepatitis C virus, Non-structural protein E2/NS1 / Hepatitis C virus non-structural protein E2/NS1 / Hepatitis C virus, Envelope glycoprotein E1 / Hepatitis C virus envelope glycoprotein E1 / RNA dependent RNA polymerase, hepatitis C virus / Viral RNA dependent RNA polymerase / Hepatitis C virus, NS3 protease, Peptidase S29 / Hepatitis C virus NS3 protease / Hepacivirus/Pegivirus NS3 protease domain profile. / DEAD box, Flavivirus / Flavivirus DEAD domain / Trypsin-like serine proteases / Superfamilies 1 and 2 helicase C-terminal domain profile. / Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. / DEAD-like helicases superfamily / Helicase, C-terminal / Helicase superfamily 1/2, ATP-binding domain / Thrombin, subunit H / Reverse transcriptase/Diguanylate cyclase domain / RNA-directed RNA polymerase, catalytic domain / RdRp of positive ssRNA viruses catalytic domain profile. / Peptidase S1, PA clan, chymotrypsin-like fold / Peptidase S1, PA clan / DNA/RNA polymerase superfamily / Beta Barrel / P-loop containing nucleoside triphosphate hydrolase / Mainly BetaSimilarity search - Domain/homology |
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Biological species | Hepatitis C virus |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.8 Å |
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Authors | Parsy, C.C. / Alexandre, F.-R. / Brandt, G. / Caillet, C. / Chaves, D. / Derock, M. / Gloux, D. / Griffon, Y. / Lallos, L.B. / Leroy, F. ...Parsy, C.C. / Alexandre, F.-R. / Brandt, G. / Caillet, C. / Chaves, D. / Derock, M. / Gloux, D. / Griffon, Y. / Lallos, L.B. / Leroy, F. / Liuzzi, M. / Loi, A.-G. / Mayes, B. / Moulat, L. / Moussa, A. / Chiara, M. / Roques, V. / Rosinovsky, E. / Seifer, M. / Stewart, A. / Wang, J. / Standring, D. / Surleraux, D. |
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Citation | Journal: Bioorg.Med.Chem.Lett. / Year: 2015 Title: Discovery and structural diversity of the hepatitis C virus NS3/4A serine protease inhibitor series leading to clinical candidate IDX320. Authors: Parsy, C.C. / Alexandre, F.R. / Bidau, V. / Bonnaterre, F. / Brandt, G. / Caillet, C. / Cappelle, S. / Chaves, D. / Convard, T. / Derock, M. / Gloux, D. / Griffon, Y. / Lallos, L.B. / Leroy, ...Authors: Parsy, C.C. / Alexandre, F.R. / Bidau, V. / Bonnaterre, F. / Brandt, G. / Caillet, C. / Cappelle, S. / Chaves, D. / Convard, T. / Derock, M. / Gloux, D. / Griffon, Y. / Lallos, L.B. / Leroy, F. / Liuzzi, M. / Loi, A.G. / Moulat, L. / Chiara, M. / Rahali, H. / Roques, V. / Rosinovsky, E. / Savin, S. / Seifer, M. / Standring, D. / Surleraux, D. |
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History | Deposition | Jul 11, 2014 | Deposition site: RCSB / Processing site: PDBE |
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Revision 1.0 | Jul 29, 2015 | Provider: repository / Type: Initial release |
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Revision 1.1 | Oct 14, 2015 | Group: Database references |
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Revision 1.2 | Nov 11, 2015 | Group: Database references |
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Revision 1.3 | May 8, 2024 | Group: Data collection / Database references Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / diffrn_radiation_wavelength Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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