Software | Name | Version | Classification |
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ADSC | Quantumdata collectionSOLVE | | phasingPHENIX | (phenix.refine: 1.6.4_486)refinementMOSFLM | | data reductionSCALA | | data scaling | | | | | | |
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Refinement | Method to determine structure: MAD / Resolution: 1.9→37.34 Å / SU ML: 0.22 / σ(F): 0 / Phase error: 25.59 / Stereochemistry target values: ML
| Rfactor | Num. reflection | % reflection | Selection details |
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Rfree | 0.2243 | 3881 | 6.49 % | RANDOM |
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Rwork | 0.1931 | - | - | - |
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obs | 0.1951 | 59754 | 96.38 % | - |
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all | - | 59766 | - | - |
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 47.72 Å2 / ksol: 0.417 e/Å3 |
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Displacement parameters | | Baniso -1 | Baniso -2 | Baniso -3 |
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1- | 3.7354 Å2 | -0 Å2 | 1.57 Å2 |
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2- | - | -7.234 Å2 | -0 Å2 |
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3- | - | - | 3.4986 Å2 |
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Refinement step | Cycle: LAST / Resolution: 1.9→37.34 Å
| Protein | Nucleic acid | Ligand | Solvent | Total |
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Num. atoms | 2987 | 0 | 0 | 366 | 3353 |
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Refine LS restraints | Refine-ID | Type | Dev ideal | Number |
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X-RAY DIFFRACTION | f_bond_d0.004 | 3051 | X-RAY DIFFRACTION | f_angle_d0.711 | 4098 | X-RAY DIFFRACTION | f_dihedral_angle_d14.89 | 1191 | X-RAY DIFFRACTION | f_chiral_restr0.051 | 433 | X-RAY DIFFRACTION | f_plane_restr0.003 | 513 | | | | | |
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LS refinement shell | Resolution (Å) | Rfactor Rfree | Num. reflection Rfree | Rfactor Rwork | Num. reflection Rwork | Refine-ID | % reflection obs (%) |
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1.9-1.9678 | 0.3082 | 372 | 0.2515 | 5647 | X-RAY DIFFRACTION | 97 | 1.9678-2.0465 | 0.2711 | 420 | 0.2185 | 5617 | X-RAY DIFFRACTION | 98 | 2.0465-2.1397 | 0.2397 | 362 | 0.2052 | 5680 | X-RAY DIFFRACTION | 97 | 2.1397-2.2525 | 0.2571 | 426 | 0.2084 | 5618 | X-RAY DIFFRACTION | 97 | 2.2525-2.3936 | 0.2174 | 365 | 0.1982 | 5589 | X-RAY DIFFRACTION | 96 | 2.3936-2.5783 | 0.2192 | 399 | 0.1902 | 5598 | X-RAY DIFFRACTION | 97 | 2.5783-2.8377 | 0.2809 | 375 | 0.2038 | 5565 | X-RAY DIFFRACTION | 96 | 2.8377-3.2481 | 0.2344 | 377 | 0.1992 | 5521 | X-RAY DIFFRACTION | 95 | 3.2481-4.0915 | 0.1842 | 392 | 0.1697 | 5563 | X-RAY DIFFRACTION | 96 | 4.0915-37.3475 | 0.1959 | 393 | 0.1769 | 5475 | X-RAY DIFFRACTION | 95 |
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