Entry Database : PDB / ID : 4pfm Structure visualization Downloads & linksTitle SHEWANELLA BENTHICA DHDPS WITH LYSINE AND PYRUVATE Components4-hydroxy-tetrahydrodipicolinate synthase Details Keywords LYASE / DIHYDRODIPICOLINATE SYNTHASE / LYSINE BIOSYNTHESIS / TIM BARRELFunction / homology Function and homology informationFunction Domain/homology Component
4-hydroxy-tetrahydrodipicolinate synthase / 4-hydroxy-tetrahydrodipicolinate synthase activity / diaminopimelate biosynthetic process / lysine biosynthetic process via diaminopimelate / cytoplasm Similarity search - Function 4-hydroxy-tetrahydrodipicolinate synthase, DapA / Schiff base-forming aldolase, conserved site / Dihydrodipicolinate synthase signature 1. / Schiff base-forming aldolase, active site / Dihydrodipicolinate synthase signature 2. / DapA-like / Dihydrodipicolinate synthetase family / Dihydrodipicolinate synthetase family / Aldolase class I / Aldolase-type TIM barrel ... 4-hydroxy-tetrahydrodipicolinate synthase, DapA / Schiff base-forming aldolase, conserved site / Dihydrodipicolinate synthase signature 1. / Schiff base-forming aldolase, active site / Dihydrodipicolinate synthase signature 2. / DapA-like / Dihydrodipicolinate synthetase family / Dihydrodipicolinate synthetase family / Aldolase class I / Aldolase-type TIM barrel / TIM Barrel / Alpha-Beta Barrel / Alpha Beta Similarity search - Domain/homologyBiological species Shewanella benthica KT99 (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.327 Å DetailsAuthors Wubben, J.M. / Paxman, J.J. / Dogovski, C. / Panjikar, S. / Perugini, M.A. CitationJournal : To Be Published Title : Defining a Molecular Determinant of Lysine-Mediated Allosteric Inhibition of DHDPS.Authors : Wubben, J.M. / Paxman, J.J. / Dogovski, C. / Panjikar, S. / Perugini, M.A. History Deposition Apr 30, 2014 Deposition site : RCSB / Processing site : RCSBRevision 1.0 May 6, 2015 Provider : repository / Type : Initial releaseRevision 1.1 Nov 22, 2017 Group : Advisory / Data collection ... Advisory / Data collection / Derived calculations / Refinement description / Source and taxonomy Category : diffrn_source / entity_src_gen ... diffrn_source / entity_src_gen / pdbx_struct_oper_list / pdbx_validate_close_contact / pdbx_validate_symm_contact / software Item : _diffrn_source.pdbx_synchrotron_site / _entity_src_gen.pdbx_alt_source_flag / _pdbx_struct_oper_list.symmetry_operationRevision 1.2 Sep 27, 2023 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / diffrn_radiation_wavelength / pdbx_initial_refinement_model / struct_conn / struct_conn_type Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id Revision 1.3 Nov 29, 2023 Group : Data collection / Category : chem_comp_atom / chem_comp_bond / Item : _chem_comp_atom.atom_id / _chem_comp_bond.atom_id_2
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