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Yorodumi- PDB-4moz: Fructose-bisphosphate aldolase from Slackia heliotrinireducens DS... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4moz | ||||||
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Title | Fructose-bisphosphate aldolase from Slackia heliotrinireducens DSM 20476 | ||||||
Components | Fructose-bisphosphate aldolase | ||||||
Keywords | LYASE / PSI-Biology / MCSG / Midwest Center for Structural Genomics / fructose-bisphosphate aldolase | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Slackia heliotrinireducens (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.15 Å | ||||||
Authors | Chang, C. / Li, H. / Jedrzejczak, R. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG) | ||||||
Citation | Journal: To be Published Title: Fructose-bisphosphate aldolase from Slackia heliotrinireducens DSM 20476 Authors: Chang, C. / Li, H. / Jedrzejczak, R. / Joachimiak, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4moz.cif.gz | 624.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4moz.ent.gz | 539.4 KB | Display | PDB format |
PDBx/mmJSON format | 4moz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mo/4moz ftp://data.pdbj.org/pub/pdb/validation_reports/mo/4moz | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 34602.820 Da / Num. of mol.: 5 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Slackia heliotrinireducens (bacteria) / Strain: DSM 20476 / Gene: Shel_19790 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3)magic / References: UniProt: C7N7V8 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.47 Å3/Da / Density % sol: 64.55 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / pH: 7.5 Details: 90 mM HEPES, 1.26M Sodium Citrate, 10% Glycerol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: APS / Beamline: 19-ID / Wavelength: 0.97923 Å |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Oct 11, 2012 |
Radiation | Monochromator: Si(111) double crystal / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97923 Å / Relative weight: 1 |
Reflection | Resolution: 2.15→50 Å / Num. all: 128812 / Num. obs: 128506 / % possible obs: 99.8 % / Observed criterion σ(I): -3 / Redundancy: 5.1 % / Rmerge(I) obs: 0.121 / Net I/σ(I): 18 |
Reflection shell | Resolution: 2.15→2.17 Å / Redundancy: 4.8 % / Rmerge(I) obs: 0.765 / Mean I/σ(I) obs: 2.2 / Num. unique all: 3136 / % possible all: 99.5 |
-Processing
Software |
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Refinement | Method to determine structure: SAD / Resolution: 2.15→50 Å / Cor.coef. Fo:Fc: 0.961 / Cor.coef. Fo:Fc free: 0.936 / Occupancy max: 1 / Occupancy min: 0 / SU B: 10.352 / SU ML: 0.115 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.744 / ESU R Free: 0.162 Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 111.63 Å2 / Biso mean: 33.0525 Å2 / Biso min: 15.05 Å2
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Refinement step | Cycle: LAST / Resolution: 2.15→50 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.154→2.21 Å / Total num. of bins used: 20
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