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- PDB-4ind: The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus -

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基本情報

登録情報
データベース: PDB / ID: 4ind
タイトルThe Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus
要素C381 turret protein
キーワードVIRAL PROTEIN / STIV / jelly roll / turret / archaeal virus / C381 / Sulfolobus turreted icosahedral virus
機能・相同性
機能・相同性情報


Jelly Rolls - #1310 / Jelly Rolls - #1320 / Jelly Rolls - #1330 / : / : / : / C381 turret protein 2nd galactose-binding domain-like / C381 turret protein 1st galactose-binding domain-like / C381 turret protein Nucleoplasmin-like/VP domain / Jelly Rolls ...Jelly Rolls - #1310 / Jelly Rolls - #1320 / Jelly Rolls - #1330 / : / : / : / C381 turret protein 2nd galactose-binding domain-like / C381 turret protein 1st galactose-binding domain-like / C381 turret protein Nucleoplasmin-like/VP domain / Jelly Rolls / Sandwich / Mainly Beta
類似検索 - ドメイン・相同性
DIHYDROGENPHOSPHATE ION / Uncharacterized protein
類似検索 - 構成要素
生物種Sulfolobus turreted icosahedral virus (ウイルス)
手法X線回折 / シンクロトロン / 単波長異常分散 / 解像度: 1.8 Å
データ登録者Eilers, B.J. / Kraft, D. / Burgess, M.C. / Young, M.J. / Lawrence, C.M.
引用ジャーナル: To be Published
タイトル: The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus
著者: Eilers, B.J. / Kraft, D. / Burgess, M.C. / Young, M.J. / Lawrence, C.M.
履歴
登録2013年1月4日登録サイト: RCSB / 処理サイト: RCSB
改定 1.02013年1月23日Provider: repository / タイプ: Initial release
改定 1.12017年11月15日Group: Refinement description / カテゴリ: software / Item: _software.name
改定 1.22024年2月28日Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ncs_dom_lim / struct_ref_seq_dif / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: C381 turret protein
B: C381 turret protein
C: C381 turret protein
D: C381 turret protein
E: C381 turret protein
F: C381 turret protein
G: C381 turret protein
H: C381 turret protein
I: C381 turret protein
J: C381 turret protein
K: C381 turret protein
L: C381 turret protein
M: C381 turret protein
N: C381 turret protein
O: C381 turret protein
P: C381 turret protein
Q: C381 turret protein
R: C381 turret protein
S: C381 turret protein
T: C381 turret protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)856,53280
ポリマ－850,71320
非ポリマー5,81960
水81,4284520
1
A: C381 turret protein
B: C381 turret protein
C: C381 turret protein
D: C381 turret protein
E: C381 turret protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)214,13320
ポリマ－212,6785
非ポリマー1,45515
水905
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area27880 Å2
ΔGint-5 kcal/mol
Surface area60630 Å2
手法PISA
2
F: C381 turret protein
G: C381 turret protein
H: C381 turret protein
I: C381 turret protein
J: C381 turret protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)214,13320
ポリマ－212,6785
非ポリマー1,45515
水905
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area27920 Å2
ΔGint-6 kcal/mol
Surface area60580 Å2
手法PISA
3
K: C381 turret protein
L: C381 turret protein
M: C381 turret protein
N: C381 turret protein
O: C381 turret protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)214,13320
ポリマ－212,6785
非ポリマー1,45515
水905
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area27940 Å2
ΔGint-6 kcal/mol
Surface area60520 Å2
手法PISA
4
P: C381 turret protein
Q: C381 turret protein
R: C381 turret protein
S: C381 turret protein
T: C381 turret protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)214,13320
ポリマ－212,6785
非ポリマー1,45515
水905
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area27960 Å2
ΔGint-6 kcal/mol
Surface area60580 Å2
手法PISA
単位格子
Length a, b, c (Å)81.774, 166.999, 186.975
Angle α, β, γ (deg.)81.840, 82.170, 81.440
Int Tables number1
Space group name H-MP1
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11chain A and (resseq 6:188 or resseq 195:205 or resseq...
21chain B and (resseq 6:188 or resseq 195:205 or resseq...
31chain C and (resseq 6:188 or resseq 195:205 or resseq...
41chain D and (resseq 6:188 or resseq 195:205 or resseq...
51chain E and (resseq 6:188 or resseq 195:205 or resseq...
61chain F and (resseq 6:188 or resseq 195:205 or resseq...
71chain G and (resseq 6:188 or resseq 195:205 or resseq...
81chain H and (resseq 6:188 or resseq 195:205 or resseq...
91chain I and (resseq 6:188 or resseq 195:205 or resseq...
101chain J and (resseq 6:188 or resseq 195:205 or resseq...
111chain K and (resseq 6:188 or resseq 195:205 or resseq...
121chain L and (resseq 6:188 or resseq 195:205 or resseq...
131chain M and (resseq 6:188 or resseq 195:205 or resseq...
141chain N and (resseq 6:188 or resseq 195:205 or resseq...
151chain O and (resseq 6:188 or resseq 195:205 or resseq...
161chain P and (resseq 6:188 or resseq 195:205 or resseq...
171chain Q and (resseq 6:188 or resseq 195:205 or resseq...
181chain R and (resseq 6:188 or resseq 195:205 or resseq...
191chain S and (resseq 6:188 or resseq 195:205 or resseq...
201chain T and (resseq 6:188 or resseq 195:205 or resseq...

NCSドメイン領域:

Ens-ID: 1

Dom-IDComponent-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11LEULEUASNASNchain 'A' and (resseq 6:188 or resseq 195:205 or resseq...AA6 - 1886 - 188
12THRTHRSERSERchain 'A' and (resseq 6:188 or resseq 195:205 or resseq...AA195 - 205195 - 205
13ALAALAHISHISchain 'A' and (resseq 6:188 or resseq 195:205 or resseq...AA207 - 383207 - 383
21LEULEUASNASNchain 'B' and (resseq 6:188 or resseq 195:205 or resseq...BB6 - 1886 - 188
22THRTHRSERSERchain 'B' and (resseq 6:188 or resseq 195:205 or resseq...BB195 - 205195 - 205
23ALAALAHISHISchain 'B' and (resseq 6:188 or resseq 195:205 or resseq...BB207 - 383207 - 383
31LEULEUASNASNchain 'C' and (resseq 6:188 or resseq 195:205 or resseq...CC6 - 1886 - 188
32THRTHRSERSERchain 'C' and (resseq 6:188 or resseq 195:205 or resseq...CC195 - 205195 - 205
33ALAALAHISHISchain 'C' and (resseq 6:188 or resseq 195:205 or resseq...CC207 - 383207 - 383
41LEULEUASNASNchain 'D' and (resseq 6:188 or resseq 195:205 or resseq...DD6 - 1886 - 188
42THRTHRSERSERchain 'D' and (resseq 6:188 or resseq 195:205 or resseq...DD195 - 205195 - 205
43ALAALAHISHISchain 'D' and (resseq 6:188 or resseq 195:205 or resseq...DD207 - 383207 - 383
51LEULEUASNASNchain 'E' and (resseq 6:188 or resseq 195:205 or resseq...EE6 - 1886 - 188
52THRTHRSERSERchain 'E' and (resseq 6:188 or resseq 195:205 or resseq...EE195 - 205195 - 205
53ALAALAHISHISchain 'E' and (resseq 6:188 or resseq 195:205 or resseq...EE207 - 383207 - 383
61LEULEUASNASNchain 'F' and (resseq 6:188 or resseq 195:205 or resseq...FF6 - 1886 - 188
62THRTHRSERSERchain 'F' and (resseq 6:188 or resseq 195:205 or resseq...FF195 - 205195 - 205
63ALAALAHISHISchain 'F' and (resseq 6:188 or resseq 195:205 or resseq...FF207 - 383207 - 383
71LEULEUASNASNchain 'G' and (resseq 6:188 or resseq 195:205 or resseq...GG6 - 1886 - 188
72THRTHRSERSERchain 'G' and (resseq 6:188 or resseq 195:205 or resseq...GG195 - 205195 - 205
73ALAALAHISHISchain 'G' and (resseq 6:188 or resseq 195:205 or resseq...GG207 - 383207 - 383
81LEULEUASNASNchain 'H' and (resseq 6:188 or resseq 195:205 or resseq...HH6 - 1886 - 188
82THRTHRSERSERchain 'H' and (resseq 6:188 or resseq 195:205 or resseq...HH195 - 205195 - 205
83ALAALAHISHISchain 'H' and (resseq 6:188 or resseq 195:205 or resseq...HH207 - 383207 - 383
91LEULEUASNASNchain 'I' and (resseq 6:188 or resseq 195:205 or resseq...II6 - 1886 - 188
92THRTHRSERSERchain 'I' and (resseq 6:188 or resseq 195:205 or resseq...II195 - 205195 - 205
93ALAALAHISHISchain 'I' and (resseq 6:188 or resseq 195:205 or resseq...II207 - 383207 - 383
101LEULEUASNASNchain 'J' and (resseq 6:188 or resseq 195:205 or resseq...JJ6 - 1886 - 188
102THRTHRSERSERchain 'J' and (resseq 6:188 or resseq 195:205 or resseq...JJ195 - 205195 - 205
103ALAALAHISHISchain 'J' and (resseq 6:188 or resseq 195:205 or resseq...JJ207 - 383207 - 383
111LEULEUASNASNchain 'K' and (resseq 6:188 or resseq 195:205 or resseq...KK6 - 1886 - 188
112THRTHRSERSERchain 'K' and (resseq 6:188 or resseq 195:205 or resseq...KK195 - 205195 - 205
113ALAALAHISHISchain 'K' and (resseq 6:188 or resseq 195:205 or resseq...KK207 - 383207 - 383
121LEULEUASNASNchain 'L' and (resseq 6:188 or resseq 195:205 or resseq...LL6 - 1886 - 188
122THRTHRSERSERchain 'L' and (resseq 6:188 or resseq 195:205 or resseq...LL195 - 205195 - 205
123ALAALAHISHISchain 'L' and (resseq 6:188 or resseq 195:205 or resseq...LL207 - 383207 - 383
131LEULEUASNASNchain 'M' and (resseq 6:188 or resseq 195:205 or resseq...MM6 - 1886 - 188
132THRTHRSERSERchain 'M' and (resseq 6:188 or resseq 195:205 or resseq...MM195 - 205195 - 205
133ALAALAHISHISchain 'M' and (resseq 6:188 or resseq 195:205 or resseq...MM207 - 383207 - 383
141LEULEUASNASNchain 'N' and (resseq 6:188 or resseq 195:205 or resseq...NN6 - 1886 - 188
142THRTHRSERSERchain 'N' and (resseq 6:188 or resseq 195:205 or resseq...NN195 - 205195 - 205
143ALAALAHISHISchain 'N' and (resseq 6:188 or resseq 195:205 or resseq...NN207 - 383207 - 383
151LEULEUASNASNchain 'O' and (resseq 6:188 or resseq 195:205 or resseq...OO6 - 1886 - 188
152THRTHRSERSERchain 'O' and (resseq 6:188 or resseq 195:205 or resseq...OO195 - 205195 - 205
153ALAALAHISHISchain 'O' and (resseq 6:188 or resseq 195:205 or resseq...OO207 - 383207 - 383
161LEULEUASNASNchain 'P' and (resseq 6:188 or resseq 195:205 or resseq...PP6 - 1886 - 188
162THRTHRSERSERchain 'P' and (resseq 6:188 or resseq 195:205 or resseq...PP195 - 205195 - 205
163ALAALAHISHISchain 'P' and (resseq 6:188 or resseq 195:205 or resseq...PP207 - 383207 - 383
171LEULEUASNASNchain 'Q' and (resseq 6:188 or resseq 195:205 or resseq...QQ6 - 1886 - 188
172THRTHRSERSERchain 'Q' and (resseq 6:188 or resseq 195:205 or resseq...QQ195 - 205195 - 205
173ALAALAHISHISchain 'Q' and (resseq 6:188 or resseq 195:205 or resseq...QQ207 - 383207 - 383
181LEULEUASNASNchain 'R' and (resseq 6:188 or resseq 195:205 or resseq...RR6 - 1886 - 188
182THRTHRSERSERchain 'R' and (resseq 6:188 or resseq 195:205 or resseq...RR195 - 205195 - 205
183ALAALAHISHISchain 'R' and (resseq 6:188 or resseq 195:205 or resseq...RR207 - 383207 - 383
191LEULEUASNASNchain 'S' and (resseq 6:188 or resseq 195:205 or resseq...SS6 - 1886 - 188
192THRTHRSERSERchain 'S' and (resseq 6:188 or resseq 195:205 or resseq...SS195 - 205195 - 205
193ALAALAHISHISchain 'S' and (resseq 6:188 or resseq 195:205 or resseq...SS207 - 383207 - 383
201LEULEUASNASNchain 'T' and (resseq 6:188 or resseq 195:205 or resseq...TT6 - 1886 - 188
202THRTHRSERSERchain 'T' and (resseq 6:188 or resseq 195:205 or resseq...TT195 - 205195 - 205
203ALAALAHISHISchain 'T' and (resseq 6:188 or resseq 195:205 or resseq...TT207 - 383207 - 383

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要素

#1: タンパク質
C381 turret protein


分子量: 42535.660 Da / 分子数: 20 / 由来タイプ: 組換発現
由来: (組換発現) Sulfolobus turreted icosahedral virus (ウイルス)
遺伝子: C381 / プラスミド: pDest14 / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21(DE3)RIL / 参照: UniProt: Q6Q0L3
#2: 化合物...
ChemComp-2HP / DIHYDROGENPHOSPHATE ION / (りん酸ジ水素)イオン


分子量: 96.987 Da / 分子数: 60 / 由来タイプ: 合成 / 式: H2O4P
#3: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 4520 / 由来タイプ: 天然 / 式: H2O

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 2

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試料調製

結晶
IDマシュー密度 (Å3/Da)溶媒含有率 (%)
12.9257.84
2
結晶化
温度 (K)Crystal-ID手法pH詳細
2911蒸気拡散法, シッティングドロップ法4.210 mg/mL native protein, 0.1 M sodium phosphate/citric acid, pH 4.2, 30-40% PEG600, VAPOR DIFFUSION, SITTING DROP, temperature 291K
2912蒸気拡散法, シッティングドロップ法4.210 mg/mL Se-Met protein, 0.1 M sodium phosphate/citric acid, pH 4.2, 30-40% PEG600, VAPOR DIFFUSION, SITTING DROP, temperature 291K

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データ収集

回折
ID平均測定温度 (K)Crystal-ID
11001
21002
放射光源
由来サイトビームラインID波長 (Å)
シンクロトロンSSRL BL12-210.95369
シンクロトロンSSRL BL9-220.97893
検出器
タイプID検出器日付詳細
DECTRIS PILATUS 6M1PIXEL2012年8月9日Shutterless data collection, fine phi slicing experiments
MARMOSAIC 325 mm CCD2CCD2011年6月25日Sample to detector distance: 100 to 650 mm, Maximum vertical offset: 200 mm
放射
IDモノクロメータープロトコル単色(M)・ラウエ(L)散乱光タイプWavelength-ID
1Liquid nitrogen-cooled double crystal Si(111)SINGLE WAVELENGTHMx-ray1
2Double crystal Si(111)SADMx-ray1
放射波長
ID波長 (Å)相対比
10.953691
20.978931
反射解像度: 1.76→39.19 Å / Num. all: 951878 / Num. obs: 837015 / % possible obs: 88 % / Observed criterion σ(F): 1.06 / Observed criterion σ(I): 0.34 / 冗長度: 3.6 % / Biso Wilson estimate: 29.29 Å2 / Rmerge(I) obs: 0.123 / Rsym value: 0.038 / Net I/σ(I): 6.4
反射 シェル解像度: 1.76→1.86 Å / 冗長度: 3.4 % / Mean I/σ(I) obs: 0.4 / % possible all: 63.9

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解析

ソフトウェア
名称バージョン分類NB
PHENIX1.8.1_1168精密化
PDB_EXTRACT3.11データ抽出
Blu-IceIceデータ収集
XDSデータ削減
SCALAデータスケーリング
PHENIX位相決定
精密化構造決定の手法: 単波長異常分散 / 解像度: 1.8→39.186 Å / Occupancy max: 1 / Occupancy min: 0.1 / FOM work R set: 0.8071 / SU ML: 0.26 / σ(F): 1.96 / 位相誤差: 26.83 / 立体化学のターゲット値: ML
Rfactor反射数%反射Selection details
Rfree0.2166 38896 5.02 %RANDOM
Rwork0.1883 ---
all0.195 ---
obs0.1898 774229 86.87 %-
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 160.3 Å2 / Biso mean: 39.3211 Å2 / Biso min: 15.9 Å2
精密化ステップサイクル: LAST / 解像度: 1.8→39.186 Å
タンパク質核酸リガンド溶媒全体
原子数58460 0 300 4520 63280
拘束条件
Refine-IDタイプDev ideal数
X-RAY DIFFRACTIONf_bond_d0.00961000
X-RAY DIFFRACTIONf_angle_d1.1883260
X-RAY DIFFRACTIONf_chiral_restr0.0849660
X-RAY DIFFRACTIONf_plane_restr0.00410600
X-RAY DIFFRACTIONf_dihedral_angle_d12.12821640
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-ID数Refine-IDタイプRms dev position (Å)
11A2925X-RAY DIFFRACTIONPOSITIONAL0.08
12B2925X-RAY DIFFRACTIONPOSITIONAL0.08
13C2925X-RAY DIFFRACTIONPOSITIONAL0.081
14D2925X-RAY DIFFRACTIONPOSITIONAL0.081
15E2925X-RAY DIFFRACTIONPOSITIONAL0.079
16F2925X-RAY DIFFRACTIONPOSITIONAL0.079
17G2925X-RAY DIFFRACTIONPOSITIONAL0.077
18H2925X-RAY DIFFRACTIONPOSITIONAL0.075
19I2925X-RAY DIFFRACTIONPOSITIONAL0.082
110J2925X-RAY DIFFRACTIONPOSITIONAL0.078
111K2925X-RAY DIFFRACTIONPOSITIONAL0.079
112L2925X-RAY DIFFRACTIONPOSITIONAL0.072
113M2925X-RAY DIFFRACTIONPOSITIONAL0.078
114N2925X-RAY DIFFRACTIONPOSITIONAL0.076
115O2925X-RAY DIFFRACTIONPOSITIONAL0.072
116P2925X-RAY DIFFRACTIONPOSITIONAL0.065
117Q2925X-RAY DIFFRACTIONPOSITIONAL0.066
118R2925X-RAY DIFFRACTIONPOSITIONAL0.072
119S2925X-RAY DIFFRACTIONPOSITIONAL0.092
120T2925X-RAY DIFFRACTIONPOSITIONAL0.094
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 30

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkNum. reflection all% reflection obs (%)
1.8-1.82050.37173880.34987442783026
1.8205-1.84190.37087390.3464134981423748
1.8419-1.86430.359810130.3411204312144472
1.8643-1.88790.36612620.3401243162557886
1.8879-1.91280.349213690.3269250312640089
1.9128-1.9390.342113530.3112257792713291
1.939-1.96670.3213700.2981259222729292
1.9667-1.9960.319513760.2948258642724092
1.996-2.02720.318113580.2819257172707591
2.0272-2.06050.306113850.2773254022678790
2.0605-2.0960.303113210.2669247142603588
2.096-2.13410.288612610.2452236612492284
2.1341-2.17510.265113930.223266852807895
2.1751-2.21950.256214130.2254266552806894
2.2195-2.26780.270413800.2248263352771593
2.2678-2.32050.256413030.2104263032760693
2.3205-2.37860.255613040.2051264162772094
2.3786-2.44290.25214170.2046259592737692
2.4429-2.51470.249213210.2035252952661690
2.5147-2.59590.24812520.2071233822463483
2.5959-2.68870.24214880.199265832807194
2.6887-2.79630.230913310.1858266932802494
2.7963-2.92350.22214440.1859264792792394
2.9235-3.07760.218314020.1854261992760193
3.0776-3.27030.216513080.1812253542666289
3.2703-3.52270.20312730.1711247802605388
3.5227-3.87690.17715340.1516268672840196
3.8769-4.43720.147514000.1285263202772094
4.4372-5.58780.14513300.1266250982642889
5.5878-39.19520.171914080.1712261532756193
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
13.8723.7835-1.18093.8119-0.24629.26110.4468-0.2438-1.20850.778-0.6826-0.34571.2937-0.33890.24220.4829-0.02520.02110.27580.02680.530953.322195.4365126.2288
28.1949-3.2035-1.19053.13550.32770.7485-0.1161-0.2911-0.15410.30090.12350.0490.04520.0437-0.02890.2878-0.0059-0.01120.1364-0.01010.139971.851597.1889125.0415
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911.2462-0.1315-0.55151.08420.69612.89380.0247-0.1109-0.096-0.03430.0041-0.13010.06080.1908-0.05550.23820.05540.03630.25960.03990.242132.010319.086361.5886
923.90871.7771-1.35824.61341.02684.2894-0.0688-0.32650.0017-0.1265-0.07560.21230.070.16620.08370.19530.0519-0.01470.21860.03820.149328.654818.283174.2373
932.4223-0.6604-1.01121.89640.12652.2252-0.3865-0.7053-0.24920.47080.1976-0.31170.60120.86220.09290.37460.22850.01790.56720.1020.303335.180313.265383.429
940.461-0.5291-0.45840.89950.38240.4234-0.0291-0.37020.05080.16860.0401-0.27880.16290.1517-0.01940.31370.0374-0.02770.55110.02950.326326.280919.5274103.7034
951.49840.35680.17893.82921.19462.06850.1593-0.29590.01990.2086-0.1028-0.31270.02540.49440.02510.27240.0108-0.0390.66590.01880.256826.905726.7131112.0203
964.912-1.77521.61188.72271.62052.0834-0.2594-0.16880.6121-0.46420.1479-0.72160.10660.7750.08720.3126-0.02950.01620.61310.02250.338825.956825.457294.3096
975.7482-4.70784.66854.1837-3.60343.93150.03420.0009-0.9477-0.1529-0.18010.15011.3648-0.35670.20780.5404-0.00830.0660.20540.00030.343414.27190.592548.0495
985.3098-0.6405-0.36871.45490.43090.65560.00450.34190.0918-0.1289-0.08110.03520.0491-0.05530.09580.3386-0.00020.05080.19120.04060.23120.265912.872548.3963
991.18590.49820.44620.51940.17211.83180.0022-0.0369-0.08820.03190.01650.01820.1933-0.0156-0.02560.28860.01560.03320.18510.02490.24913.46386.076159.8038
1005.3946-1.25280.33792.33621.63574.2928-0.1795-0.05410.29840.02710.2044-0.09040.09180.083-0.0280.2514-0.00210.0180.20550.05320.16352.05038.117672.6798
1011.62551.1164-0.08263.13330.01732.6293-0.0754-0.2011-0.23480.13410.00660.03110.7732-0.24960.06210.4003-0.04380.04990.22690.07830.2161-0.4674-0.2681.4168
1021.20760.2479-0.18580.15930.01062.63390.0037-0.4323-0.15550.10830.0577-0.02250.3686-0.2885-0.11950.4021-0.00680.0470.37720.05890.34573.36428.5976102.2295
1031.88610.36290.73222.58530.19322.1986-0.0021-0.457-0.20490.2479-0.0441-0.11660.34920.47260.06080.34480.06550.02860.49350.0990.250610.62979.5945110.4262
1046.48951.72770.92099.76611.05124.86920.1012-0.3507-0.39440.121-0.0694-0.76480.23540.0091-0.09910.47130.07680.05620.32950.10550.31438.633611.405392.8411
1054.84574.2716-3.25235.3015-3.41062.42240.3785-0.21360.95760.43260.0511.4923-0.3372-0.6995-0.38330.3230.04530.0840.4026-0.04890.5064-19.65618.412447.6339
1061.3761-0.4406-0.32212.63681.18611.50270.06310.14150.0561-0.5148-0.04510.1259-0.1806-0.12570.02320.26170.01470.01760.2420.03320.2293-12.19335.437849.1222
1071.02-0.41030.3671.2942-0.78742.7061-0.0353-0.0381-0.00840.0341-0.01810.0259-0.0302-0.08180.04120.20010.00760.01840.2103-0.00620.2033-17.442329.44160.2031
1081.52590.45391.47235.50350.37293.38390.12890.03110.02740.0351-0.0892-0.4081-0.03830.1971-0.00630.18620.03040.04840.24420.01980.1686-15.647130.42373.1574
1094.348-1.19790.7631.1628-0.07130.361-0.1532-0.4358-0.08190.13990.08910.17530.0454-0.18590.07080.22110.02850.05130.32860.01330.1764-24.206129.647382.0149
1100.667-0.2680.97631.9371-0.02421.66490.134-0.2175-0.070.52760.08830.2187-0.4632-0.3282-0.21540.23620.03090.02670.41350.00920.28-14.181727.0167102.5032
1111.915-0.4241.00412.6558-0.0840.94510.0271-0.2892-0.17080.32770.03970.13810.2097-0.0687-0.00950.3058-0.00720.06960.45550.02860.229-10.853219.7747110.0867
1122.1972-2.67821.69698.04742.064.89770.2037-0.2726-1.00660.0553-0.32770.01660.2129-0.5650.22320.2981-0.01420.05180.4771-0.02460.47-10.113523.595192.7344
1131.9319-0.9831.37451.7782-3.51187.14860.1662-0.02821.4248-0.62170.0161-0.5357-0.8067-0.6873-0.23970.39020.1014-0.0140.27590.04250.4912-13.313756.1349.9219
1147.02062.37310.63122.1466-0.18810.7983-0.12470.26570.2316-0.21020.07770.059-0.01140.00840.02560.33860.0560.06560.1787-0.0040.23265.224254.500650.9384
1151.18140.7454-0.78111.944-0.72572.39110.0381-0.10230.12460.02340.01930.0598-0.1157-0.024-0.04820.25660.04430.02620.1768-0.02370.2399-1.930756.631462.3493
1164.05631.83530.81072.7492-1.81882.9367-0.1134-0.1245-0.2058-0.22450.1772-0.19470.02770.0422-0.06960.25740.00470.0780.2369-0.0580.2083-0.172154.229475.1277
1170.9928-0.3473-0.17614.61620.72761.3060.0559-0.02120.22170.14370.02240.1177-0.3037-0.0449-0.07090.33240.02110.0550.2567-0.04470.2506-3.536661.367184.6065
1180.67870.5383-0.14410.6933-0.77281.69540.1328-0.36470.28320.2133-0.04230.2568-0.3541-0.0444-0.10740.34430.01850.06990.3989-0.12110.3442-2.315349.3896104.2472
1191.7550.8766-0.27752.6336-1.33541.50330.1898-0.47330.26220.2655-0.15720.2385-0.1299-0.28960.01460.34650.01550.08750.5345-0.11640.2944-7.928543.2961111.4837
1207.1655-1.1886-0.76026.3803-3.32635.3601-0.32140.1193-0.4840.10940.4120.8483-0.1658-0.17820.00060.33550.04040.02970.3386-0.07290.3608-4.437345.232694.1566
1216.58461.5598-0.29926.84-1.1544.43990.0939-0.0596-1.30170.32280.03270.1141.4041-0.2427-0.29010.4799-0.05320.03380.17060.05540.478912.212725.1689215.0628
1228.1706-3.0015-1.0693.11530.4361.0745-0.0462-0.4031-0.27740.23690.14260.1232-0.00680.0157-0.10220.2938-0.01730.00950.13950.01240.211830.753526.9992214.2713
1230.9208-0.246-0.07120.8-0.7182.37360.04730.0707-0.0688-0.00960.01410.07140.0962-0.084-0.06170.2887-0.02160.02790.18390.00210.292523.731724.8273202.7765
1246.1494-0.6005-1.47113.1491-2.52894.021-0.1875-0.00270.09090.14710.2223-0.2329-0.0658-0.0702-0.04470.2890.0179-0.00650.2304-0.07260.206725.608327.2982190.0107
1251.7424-0.2498-0.03695.6560.00252.3890.01940.1479-0.3666-0.483-0.00530.18480.6867-0.184-0.00720.4038-0.0431-0.0150.2407-0.04030.270322.473420.1635180.4408
1260.5497-0.34190.47031.0252-0.9912.56450.06830.2604-0.2222-0.1632-0.00060.20530.2898-0.0503-0.12550.2894-0.0236-0.01620.317-0.07950.328923.749632.1962160.8792
1272.1589-0.28880.05382.9249-0.79591.5870.00120.4376-0.206-0.25210.07020.33890.0535-0.302-0.03620.2533-0.0453-0.03650.3805-0.10160.277518.14638.2334153.5895
1284.4265-3.93392.9163.9873-1.48595.1503-0.2384-0.2634-0.4116-0.1430.1540.92730.0063-0.11320.31370.35060.00620.02720.24-0.05550.437121.461636.3066170.9606
1292.94160.26523.04552.013-0.33743.33730.2760.2137-0.59120.173-0.2847-0.35380.45611.2911-0.01450.40970.09110.03180.30650.0140.407649.989119.4676213.1953
1305.96143.59930.30473.7704-0.08160.55510.1564-0.1393-0.19730.2281-0.1147-0.08390.06610.0455-0.04380.23950.03740.04330.1547-0.00580.178954.009737.6533214.0186
1312.57190.10041.31830.85330.05272.0180.00680.0748-0.19970.00130.0667-0.03620.12590.0837-0.09690.24660.03260.01950.1903-0.01160.280554.310931.2761201.9573
1323.07012.3561.80885.0723-1.25884.0454-0.1024-0.0690.1733-0.0830.08910.23660.0763-0.1260.00430.20530.02950.03810.1951-0.03640.151752.996334.8216189.3889
1334.0624-1.52770.30591.83-0.22091.39490.03180.5249-0.2423-0.1556-0.087-0.25850.24970.35010.04340.260.05270.04890.3272-0.07790.274459.103530.3118179.6227
1341.43030.10650.37380.7829-0.6410.7792-0.03070.4403-0.2895-0.30540.1282-0.11760.04540.5362-0.12520.27020.05110.05180.4189-0.10510.332448.770536.9655160.2091
1351.96120.05331.1551.7738-0.37240.87360.04150.5076-0.3013-0.27250.04130.0090.29180.1822-0.02180.32530.03510.03120.4499-0.13630.285941.542234.1516152.4064
1365.27662.50510.7034.4372-0.69862.08660.26510.2537-0.56680.0706-0.43580.45310.42110.17070.10470.45780.05830.05450.3493-0.08360.432543.793435.29170.0209
1375.51953.8949-3.85753.8862-1.63073.77270.7589-1.17650.16270.116-0.5277-1.0346-0.80010.9013-0.25290.2847-0.07230.02420.41370.02380.466866.941953.8331214.8915
1383.5186-3.0989-0.05573.07970.65110.9306-0.2088-0.21430.16230.29720.2284-0.1661-0.03120.0752-0.04360.254-0.01590.00840.22360.02240.206450.937563.3278215.7896
1391.30260.54340.1262.19930.95112.8277-0.00930.09410.06-0.04020.0184-0.1269-0.07760.1826-0.00230.1936-0.0136-0.0040.20310.03420.216957.568562.5111203.9062
1404.5265-2.47320.74134.19390.69845.2682-0.0030.2468-0.11910.2286-0.10250.2414-0.00910.1390.11010.2163-0.03120.02570.17890.02890.150854.270863.3674191.2421
1412.08060.15691.6970.53050.74812.68-0.39080.61230.2074-0.3230.1475-0.2058-0.62220.91630.1210.358-0.22470.01710.4920.10570.259560.804568.511182.1234
1420.1933-0.04630.74670.8941-0.0521.9580.11510.31530.019-0.2970.1049-0.2415-0.46530.4117-0.20180.3442-0.07560.07460.4437-0.00580.296152.081762.2994161.7528
1431.28-0.2122-0.23962.23871.35110.9043-0.01960.4166-0.0248-0.29160.0728-0.21720.00380.38620.01160.312-0.03690.070.5458-0.02140.243452.811355.1766153.3971
1446.2625-2.69053.26412.024-1.49369.7398-0.31250.6257-1.05060.00730.333-0.05090.25980.61960.06160.2317-0.03460.02770.4151-0.00350.420951.734156.3128171.1066
1453.52813.54770.10663.76961.17876.52280.19660.32590.95250.7651-0.1215-0.2526-1.149-0.5382-0.01580.48840.04950.09290.24690.03330.360539.678480.9163217.3599
1465.85140.86440.52041.63740.55580.59170.0421-0.3987-0.10210.065-0.04910.0376-0.0521-0.09750.00470.29820.03730.02630.19570.04430.212825.741468.5668216.9034
1471.4915-0.4581-0.59121.39390.22152.21230.03840.03840.0801-0.0069-0.02370.0085-0.2323-0.0439-0.02670.30740.02450.00940.16350.01550.23328.951375.4187205.5358
1484.5340.9673-0.78782.53590.15884.7155-0.2061-0.1356-0.3153-0.01830.1763-0.047-0.03780.14060.02660.26450.04660.02920.18740.04160.180627.585873.4175192.6468
1491.4143-1.35070.31433.43130.05992.27680.01810.15490.1479-0.1372-0.02510.0759-0.687-0.22870.01180.40320.07890.02230.18410.05920.211325.037481.8148183.9413
1501.0923-0.0302-0.03140.08190.60892.205-0.07280.35090.1507-0.15730.02-0.0776-0.2947-0.00950.03340.41610.01670.03230.33040.04990.31629.013473.0461163.0984
1512.5715-0.5617-0.62543.10190.42311.565-0.06870.47510.168-0.32640.0866-0.1507-0.25250.40510.05160.375-0.0660.03270.42210.06590.212236.319672.1288154.9277
1526.99961.1037-3.17297.2239-0.90034.8158-0.1825-0.03450.1837-0.26360.3083-1.021-0.51970.3079-0.24130.2866-0.0569-0.03090.3118-0.02090.37534.268670.2375172.4999
1534.0389-4.89983.20469.1226-2.83523.0150.3016-0.4139-0.8546-0.29650.00511.53990.4128-0.8971-0.25870.2923-0.01390.02160.4252-0.05050.46845.871363.0144217.5346
1541.34480.6109-0.00224.9441.28831.17560.0372-0.0817-0.10820.4789-0.04380.13650.1289-0.10080.00150.26120.01990.01380.23820.02820.240313.344845.9864216.055
1551.5590.693-0.70342.0601-0.9422.846-0.00570.04230.053-0.0229-0.00290.0648-0.0295-0.0979-0.00530.21360.02130.01920.204-0.00670.21788.142352.0036204.9625
1561.52111.283-1.26394.96430.39553.74840.03170.0192-0.31130.0203-0.0297-0.44930.06560.0827-0.01190.18280.0035-0.02660.21090.04030.19479.990751.0405192.0113
1577.24951.7093-0.63081.6619-0.07130.6138-0.10590.34510.072-0.0770.0490.1796-0.0449-0.19770.04380.2339-0.0013-0.00960.28230.00420.20161.468451.8293183.1355
1580.42410.1999-0.74440.9247-0.11351.56860.00950.27410.0181-0.27640.00750.16230.2586-0.1409-0.03590.29430.0006-0.01890.4301-0.00910.32311.590254.4745162.6626
1592.78060.7443-0.68223.1452-1.01862.0495-0.04990.36120.214-0.24540.04870.1342-0.3749-0.01680.05020.26620.0277-0.04170.35140.01750.224514.94661.7297155.0981
1606.29160.4023-1.24977.37850.6185.72840.16940.06341.127-0.0843-0.1439-0.0584-0.4336-0.5837-0.01440.34110.06230.02450.401-0.01640.398415.60857.8973172.4586
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1(chain A and resid 6:11)A6 - 11
2X-RAY DIFFRACTION2(chain A and resid 12:59)A12 - 59
3X-RAY DIFFRACTION3(chain A and resid 60:149)A60 - 149
4X-RAY DIFFRACTION4(chain A and resid 150:174)A150 - 174
5X-RAY DIFFRACTION5(chain A and resid 175:257)A175 - 257
6X-RAY DIFFRACTION6(chain A and resid 258:289)A258 - 289
7X-RAY DIFFRACTION7(chain A and resid 290:373)A290 - 373
8X-RAY DIFFRACTION8(chain A and resid 374:383)A374 - 383
9X-RAY DIFFRACTION9(chain B and resid 6:11)B6 - 11
10X-RAY DIFFRACTION10(chain B and resid 12:59)B12 - 59
11X-RAY DIFFRACTION11(chain B and resid 60:149)B60 - 149
12X-RAY DIFFRACTION12(chain B and resid 150:174)B150 - 174
13X-RAY DIFFRACTION13(chain B and resid 175:257)B175 - 257
14X-RAY DIFFRACTION14(chain B and resid 258:289)B258 - 289
15X-RAY DIFFRACTION15(chain B and resid 290:373)B290 - 373
16X-RAY DIFFRACTION16(chain B and resid 374:383)B374 - 383
17X-RAY DIFFRACTION17(chain C and resid 6:11)C6 - 11
18X-RAY DIFFRACTION18(chain C and resid 12:59)C12 - 59
19X-RAY DIFFRACTION19(chain C and resid 60:149)C60 - 149
20X-RAY DIFFRACTION20(chain C and resid 150:174)C150 - 174
21X-RAY DIFFRACTION21(chain C and resid 175:257)C175 - 257
22X-RAY DIFFRACTION22(chain C and resid 258:289)C258 - 289
23X-RAY DIFFRACTION23(chain C and resid 290:373)C290 - 373
24X-RAY DIFFRACTION24(chain C and resid 374:383)C374 - 383
25X-RAY DIFFRACTION25(chain D and resid 6:11)D6 - 11
26X-RAY DIFFRACTION26(chain D and resid 12:59)D12 - 59
27X-RAY DIFFRACTION27(chain D and resid 60:149)D60 - 149
28X-RAY DIFFRACTION28(chain D and resid 150:174)D150 - 174
29X-RAY DIFFRACTION29(chain D and resid 175:257)D175 - 257
30X-RAY DIFFRACTION30(chain D and resid 258:289)D258 - 289
31X-RAY DIFFRACTION31(chain D and resid 290:373)D290 - 373
32X-RAY DIFFRACTION32(chain D and resid 374:383)D374 - 383
33X-RAY DIFFRACTION33(chain E and resid 6:11)E6 - 11
34X-RAY DIFFRACTION34(chain E and resid 12:59)E12 - 59
35X-RAY DIFFRACTION35(chain E and resid 60:149)E60 - 149
36X-RAY DIFFRACTION36(chain E and resid 150:174)E150 - 174
37X-RAY DIFFRACTION37(chain E and resid 175:257)E175 - 257
38X-RAY DIFFRACTION38(chain E and resid 258:289)E258 - 289
39X-RAY DIFFRACTION39(chain E and resid 290:373)E290 - 373
40X-RAY DIFFRACTION40(chain E and resid 374:383)E374 - 383
41X-RAY DIFFRACTION41(chain F and resid 6:11)F6 - 11
42X-RAY DIFFRACTION42(chain F and resid 12:59)F12 - 59
43X-RAY DIFFRACTION43(chain F and resid 60:149)F60 - 149
44X-RAY DIFFRACTION44(chain F and resid 150:174)F150 - 174
45X-RAY DIFFRACTION45(chain F and resid 175:257)F175 - 257
46X-RAY DIFFRACTION46(chain F and resid 258:289)F258 - 289
47X-RAY DIFFRACTION47(chain F and resid 290:373)F290 - 373
48X-RAY DIFFRACTION48(chain F and resid 374:383)F374 - 383
49X-RAY DIFFRACTION49(chain G and resid 6:11)G6 - 11
50X-RAY DIFFRACTION50(chain G and resid 12:59)G12 - 59
51X-RAY DIFFRACTION51(chain G and resid 60:149)G60 - 149
52X-RAY DIFFRACTION52(chain G and resid 150:174)G150 - 174
53X-RAY DIFFRACTION53(chain G and resid 175:257)G175 - 257
54X-RAY DIFFRACTION54(chain G and resid 258:289)G258 - 289
55X-RAY DIFFRACTION55(chain G and resid 290:373)G290 - 373
56X-RAY DIFFRACTION56(chain G and resid 374:383)G374 - 383
57X-RAY DIFFRACTION57(chain H and resid 6:11)H6 - 11
58X-RAY DIFFRACTION58(chain H and resid 12:59)H12 - 59
59X-RAY DIFFRACTION59(chain H and resid 60:149)H60 - 149
60X-RAY DIFFRACTION60(chain H and resid 150:174)H150 - 174
61X-RAY DIFFRACTION61(chain H and resid 175:257)H175 - 257
62X-RAY DIFFRACTION62(chain H and resid 258:289)H258 - 289
63X-RAY DIFFRACTION63(chain H and resid 290:373)H290 - 373
64X-RAY DIFFRACTION64(chain H and resid 374:383)H374 - 383
65X-RAY DIFFRACTION65(chain I and resid 6:11)I6 - 11
66X-RAY DIFFRACTION66(chain I and resid 12:59)I12 - 59
67X-RAY DIFFRACTION67(chain I and resid 60:149)I60 - 149
68X-RAY DIFFRACTION68(chain I and resid 150:174)I150 - 174
69X-RAY DIFFRACTION69(chain I and resid 175:257)I175 - 257
70X-RAY DIFFRACTION70(chain I and resid 258:289)I258 - 289
71X-RAY DIFFRACTION71(chain I and resid 290:373)I290 - 373
72X-RAY DIFFRACTION72(chain I and resid 374:383)I374 - 383
73X-RAY DIFFRACTION73(chain J and resid 6:11)J6 - 11
74X-RAY DIFFRACTION74(chain J and resid 12:59)J12 - 59
75X-RAY DIFFRACTION75(chain J and resid 60:149)J60 - 149
76X-RAY DIFFRACTION76(chain J and resid 150:174)J150 - 174
77X-RAY DIFFRACTION77(chain J and resid 175:257)J175 - 257
78X-RAY DIFFRACTION78(chain J and resid 258:289)J258 - 289
79X-RAY DIFFRACTION79(chain J and resid 290:373)J290 - 373
80X-RAY DIFFRACTION80(chain J and resid 374:383)J374 - 383
81X-RAY DIFFRACTION81(chain K and resid 6:11)K6 - 11
82X-RAY DIFFRACTION82(chain K and resid 12:59)K12 - 59
83X-RAY DIFFRACTION83(chain K and resid 60:149)K60 - 149
84X-RAY DIFFRACTION84(chain K and resid 150:174)K150 - 174
85X-RAY DIFFRACTION85(chain K and resid 175:257)K175 - 257
86X-RAY DIFFRACTION86(chain K and resid 258:289)K258 - 289
87X-RAY DIFFRACTION87(chain K and resid 290:373)K290 - 373
88X-RAY DIFFRACTION88(chain K and resid 374:383)K374 - 383
89X-RAY DIFFRACTION89(chain L and resid 6:11)L6 - 11
90X-RAY DIFFRACTION90(chain L and resid 12:59)L12 - 59
91X-RAY DIFFRACTION91(chain L and resid 60:149)L60 - 149
92X-RAY DIFFRACTION92(chain L and resid 150:174)L150 - 174
93X-RAY DIFFRACTION93(chain L and resid 175:257)L175 - 257
94X-RAY DIFFRACTION94(chain L and resid 258:289)L258 - 289
95X-RAY DIFFRACTION95(chain L and resid 290:373)L290 - 373
96X-RAY DIFFRACTION96(chain L and resid 374:383)L374 - 383
97X-RAY DIFFRACTION97(chain M and resid 6:11)M6 - 11
98X-RAY DIFFRACTION98(chain M and resid 12:59)M12 - 59
99X-RAY DIFFRACTION99(chain M and resid 60:149)M60 - 149
100X-RAY DIFFRACTION100(chain M and resid 150:174)M150 - 174
101X-RAY DIFFRACTION101(chain M and resid 175:257)M175 - 257
102X-RAY DIFFRACTION102(chain M and resid 258:289)M258 - 289
103X-RAY DIFFRACTION103(chain M and resid 290:373)M290 - 373
104X-RAY DIFFRACTION104(chain M and resid 374:383)M374 - 383
105X-RAY DIFFRACTION105(chain N and resid 6:11)N6 - 11
106X-RAY DIFFRACTION106(chain N and resid 12:59)N12 - 59
107X-RAY DIFFRACTION107(chain N and resid 60:149)N60 - 149
108X-RAY DIFFRACTION108(chain N and resid 150:174)N150 - 174
109X-RAY DIFFRACTION109(chain N and resid 175:257)N175 - 257
110X-RAY DIFFRACTION110(chain N and resid 258:289)N258 - 289
111X-RAY DIFFRACTION111(chain N and resid 290:373)N290 - 373
112X-RAY DIFFRACTION112(chain N and resid 374:383)N374 - 383
113X-RAY DIFFRACTION113(chain O and resid 6:11)O6 - 11
114X-RAY DIFFRACTION114(chain O and resid 12:59)O12 - 59
115X-RAY DIFFRACTION115(chain O and resid 60:149)O60 - 149
116X-RAY DIFFRACTION116(chain O and resid 150:174)O150 - 174
117X-RAY DIFFRACTION117(chain O and resid 175:257)O175 - 257
118X-RAY DIFFRACTION118(chain O and resid 258:289)O258 - 289
119X-RAY DIFFRACTION119(chain O and resid 290:373)O290 - 373
120X-RAY DIFFRACTION120(chain O and resid 374:383)O374 - 383
121X-RAY DIFFRACTION121(chain P and resid 6:11)P6 - 11
122X-RAY DIFFRACTION122(chain P and resid 12:59)P12 - 59
123X-RAY DIFFRACTION123(chain P and resid 60:149)P60 - 149
124X-RAY DIFFRACTION124(chain P and resid 150:174)P150 - 174
125X-RAY DIFFRACTION125(chain P and resid 175:257)P175 - 257
126X-RAY DIFFRACTION126(chain P and resid 258:289)P258 - 289
127X-RAY DIFFRACTION127(chain P and resid 290:373)P290 - 373
128X-RAY DIFFRACTION128(chain P and resid 374:383)P374 - 383
129X-RAY DIFFRACTION129(chain Q and resid 6:11)Q6 - 11
130X-RAY DIFFRACTION130(chain Q and resid 12:59)Q12 - 59
131X-RAY DIFFRACTION131(chain Q and resid 60:149)Q60 - 149
132X-RAY DIFFRACTION132(chain Q and resid 150:174)Q150 - 174
133X-RAY DIFFRACTION133(chain Q and resid 175:257)Q175 - 257
134X-RAY DIFFRACTION134(chain Q and resid 258:289)Q258 - 289
135X-RAY DIFFRACTION135(chain Q and resid 290:373)Q290 - 373
136X-RAY DIFFRACTION136(chain Q and resid 374:383)Q374 - 383
137X-RAY DIFFRACTION137(chain R and resid 6:11)R6 - 11
138X-RAY DIFFRACTION138(chain R and resid 12:59)R12 - 59
139X-RAY DIFFRACTION139(chain R and resid 60:149)R60 - 149
140X-RAY DIFFRACTION140(chain R and resid 150:174)R150 - 174
141X-RAY DIFFRACTION141(chain R and resid 175:257)R175 - 257
142X-RAY DIFFRACTION142(chain R and resid 258:289)R258 - 289
143X-RAY DIFFRACTION143(chain R and resid 290:373)R290 - 373
144X-RAY DIFFRACTION144(chain R and resid 374:383)R374 - 383
145X-RAY DIFFRACTION145(chain S and resid 6:11)S6 - 11
146X-RAY DIFFRACTION146(chain S and resid 12:59)S12 - 59
147X-RAY DIFFRACTION147(chain S and resid 60:149)S60 - 149
148X-RAY DIFFRACTION148(chain S and resid 150:174)S150 - 174
149X-RAY DIFFRACTION149(chain S and resid 175:257)S175 - 257
150X-RAY DIFFRACTION150(chain S and resid 258:289)S258 - 289
151X-RAY DIFFRACTION151(chain S and resid 290:373)S290 - 373
152X-RAY DIFFRACTION152(chain S and resid 374:383)S374 - 383
153X-RAY DIFFRACTION153(chain T and resid 6:11)T6 - 11
154X-RAY DIFFRACTION154(chain T and resid 12:59)T12 - 59
155X-RAY DIFFRACTION155(chain T and resid 60:149)T60 - 149
156X-RAY DIFFRACTION156(chain T and resid 150:174)T150 - 174
157X-RAY DIFFRACTION157(chain T and resid 175:257)T175 - 257
158X-RAY DIFFRACTION158(chain T and resid 258:289)T258 - 289
159X-RAY DIFFRACTION159(chain T and resid 290:373)T290 - 373
160X-RAY DIFFRACTION160(chain T and resid 374:383)T374 - 383

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る