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Open data
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Basic information
Entry | Database: PDB / ID: 4gm5 | ||||||
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Title | Carboxypeptidase T with Sulphamoil Arginine | ||||||
![]() | Carboxypeptidase T | ||||||
![]() | HYDROLASE/HYDROLASE inhibitor / Zinc carboxypeptidase / HYDROLASE-HYDROLASE inhibitor complex | ||||||
Function / homology | ![]() carboxypeptidase T / metallocarboxypeptidase activity / proteolysis / extracellular space / zinc ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kuznetsov, S.A. / Timofeev, V.I. / Akparov, V.K. / Kuranova, I.P. | ||||||
![]() | ![]() Title: Carboxypeptidase T with Sulphamoil Arginine Authors: Kuznetsov, S.A. / Timofeev, V.I. / Akparov, V.K. / Kuranova, I.P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 175.5 KB | Display | ![]() |
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PDB format | ![]() | 148.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 796.1 KB | Display | ![]() |
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Full document | ![]() | 802.2 KB | Display | |
Data in XML | ![]() | 21.2 KB | Display | |
Data in CIF | ![]() | 31.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
-Protein , 1 types, 1 molecules A
#1: Protein | Mass: 36641.277 Da / Num. of mol.: 1 / Fragment: unp residues 99-421 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Non-polymers , 6 types, 435 molecules ![](data/chem/img/ZN.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/0X9.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/0X9.gif)
![](data/chem/img/GOL.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | ChemComp-ZN / | ||||||||
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#3: Chemical | ChemComp-CA / #4: Chemical | ChemComp-SO4 / #5: Chemical | ChemComp-0X9 / | #6: Chemical | ChemComp-GOL / #7: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 5.17 Å3/Da / Density % sol: 76.19 % |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.8 Å / Relative weight: 1 |
Reflection | Resolution: 1.388→26.95 Å / Num. all: 152576 / Num. obs: 151202 / % possible obs: 99.1 % / Redundancy: 4.97 % / Rmerge(I) obs: 0.067 / Net I/σ(I): 15.7916 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 17.129 Å2
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Refinement step | Cycle: LAST / Resolution: 1.39→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.388→1.424 Å / Total num. of bins used: 20
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