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- PDB-4g2m: Structure of a Lys-HCT mutant from Coffea canephora (Crystal form 2) -
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Open data
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Basic information
Entry | Database: PDB / ID: 4g2m | ||||||
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Title | Structure of a Lys-HCT mutant from Coffea canephora (Crystal form 2) | ||||||
![]() | Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase | ||||||
![]() | TRANSFERASE / BAHD Superfamily / hydroxycinnamoyl transferase | ||||||
Function / homology | Transferase family / Chloramphenicol Acetyltransferase / Chloramphenicol acetyltransferase-like domain / acyltransferase activity, transferring groups other than amino-acyl groups / Chloramphenicol acetyltransferase-like domain superfamily / 2-Layer Sandwich / Alpha Beta / Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lallemand, L.A. / McCarthy, J.G. / McCarthy, A.A. | ||||||
![]() | ![]() Title: A structural basis for the biosynthesis of the major chlorogenic acids found in coffee. Authors: Lallemand, L.A. / Zubieta, C. / Lee, S.G. / Wang, Y. / Acajjaoui, S. / Timmins, J. / McSweeney, S. / Jez, J.M. / McCarthy, J.G. / McCarthy, A.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 167.9 KB | Display | ![]() |
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PDB format | ![]() | 139.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 428 KB | Display | ![]() |
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Full document | ![]() | 430.9 KB | Display | |
Data in XML | ![]() | 16.7 KB | Display | |
Data in CIF | ![]() | 22.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 48416.977 Da / Num. of mol.: 1 / Mutation: K210A, K217A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.26 Å3/Da / Density % sol: 45.57 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 9 Details: 15% PEG 4000, 0.2 M MgCl2 and 0.1 M Tris-HCl, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Feb 27, 2009 / Details: Toroidal mirror |
Radiation | Monochromator: Si111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.976 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→50 Å / Num. all: 59400 / Num. obs: 15066 / % possible obs: 96.9 % / Observed criterion σ(F): 1 / Observed criterion σ(I): 1 / Rmerge(I) obs: 0.076 / Net I/σ(I): 15.64 |
Reflection shell | Resolution: 2.5→2.5 Å / Rmerge(I) obs: 0.528 / Mean I/σ(I) obs: 2.88 / Num. unique all: 6492 / % possible all: 94.5 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | |||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 46.652 Å2
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Refinement step | Cycle: LAST / Resolution: 2.5→50 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.5→2.565 Å / Total num. of bins used: 20
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Refinement TLS params. | Method: refined / Origin x: -17.7045 Å / Origin y: -22.5635 Å / Origin z: 11.5391 Å
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