endopeptidase La / ATP-dependent peptidase activity / protein catabolic process / serine-type endopeptidase activity / proteolysis / ATP binding Similarity search - Function
Resolution: 1.99→20 Å / Cor.coef. Fo:Fc: 0.954 / Cor.coef. Fo:Fc free: 0.936 / SU B: 3.718 / SU ML: 0.097 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.033 / ESU R Free: 0.031 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.25893
3479
5 %
RANDOM
Rwork
0.22958
-
-
-
all
0.23101
67027
-
-
obs
0.23101
66578
99.33 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
Displacement parameters
Biso mean: 37.063 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-15.92 Å2
-0 Å2
-0 Å2
2-
-
-15.92 Å2
-0 Å2
3-
-
-
31.85 Å2
Refinement step
Cycle: LAST / Resolution: 1.99→20 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
4562
0
20
583
5165
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.03
0.019
4689
X-RAY DIFFRACTION
r_bond_other_d
X-RAY DIFFRACTION
r_angle_refined_deg
2.673
1.992
6374
X-RAY DIFFRACTION
r_angle_other_deg
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
6.98
5
594
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
36.538
22.823
209
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
18.98
15
730
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
19.601
15
49
X-RAY DIFFRACTION
r_chiral_restr
0.202
0.2
720
X-RAY DIFFRACTION
r_gen_planes_refined
0.016
0.021
3592
X-RAY DIFFRACTION
r_gen_planes_other
X-RAY DIFFRACTION
r_nbd_refined
X-RAY DIFFRACTION
r_nbd_other
X-RAY DIFFRACTION
r_nbtor_refined
X-RAY DIFFRACTION
r_nbtor_other
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
X-RAY DIFFRACTION
r_xyhbond_nbd_other
X-RAY DIFFRACTION
r_metal_ion_refined
X-RAY DIFFRACTION
r_metal_ion_other
X-RAY DIFFRACTION
r_symmetry_vdw_refined
X-RAY DIFFRACTION
r_symmetry_vdw_other
X-RAY DIFFRACTION
r_symmetry_hbond_refined
X-RAY DIFFRACTION
r_symmetry_hbond_other
X-RAY DIFFRACTION
r_symmetry_metal_ion_refined
X-RAY DIFFRACTION
r_symmetry_metal_ion_other
X-RAY DIFFRACTION
r_mcbond_it
X-RAY DIFFRACTION
r_mcbond_other
X-RAY DIFFRACTION
r_mcangle_it
X-RAY DIFFRACTION
r_scbond_it
X-RAY DIFFRACTION
r_scangle_it
X-RAY DIFFRACTION
r_rigid_bond_restr
X-RAY DIFFRACTION
r_sphericity_free
X-RAY DIFFRACTION
r_sphericity_bonded
LS refinement shell
Resolution: 1.989→2.04 Å / Total num. of bins used: 20
Rfactor
Num. reflection
% reflection
Rfree
0.422
250
-
Rwork
0.363
4810
-
obs
-
-
98.25 %
+
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