- PDB-4f4b: Structure of OSH4 with a cholesterol analog -
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基本情報
登録情報
データベース: PDB / ID: 4f4b
タイトル
Structure of OSH4 with a cholesterol analog
要素
Protein KES1
キーワード
LIPID BINDING PROTEIN / OXYSTEROL / STEROL BINDING PROTEIN
機能・相同性
機能・相同性情報
Acyl chain remodelling of PS / Synthesis of bile acids and bile salts / sterol transfer activity / sterol transport / : / post-Golgi vesicle-mediated transport / ER to Golgi ceramide transport / maintenance of cell polarity / sphingolipid metabolic process / phosphatidic acid binding ...Acyl chain remodelling of PS / Synthesis of bile acids and bile salts / sterol transfer activity / sterol transport / : / post-Golgi vesicle-mediated transport / ER to Golgi ceramide transport / maintenance of cell polarity / sphingolipid metabolic process / phosphatidic acid binding / piecemeal microautophagy of the nucleus / oxysterol binding / phosphatidylinositol-4-phosphate binding / exocytosis / phosphatidylinositol-4,5-bisphosphate binding / endocytosis / Golgi membrane / lipid binding / membrane / cytoplasm / cytosol 類似検索 - 分子機能
Helix Hairpins - #2720 / Porin - #120 / Alpha-Beta Plaits - #3490 / Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #1430 / Oxysterol-binding protein / Oxysterol-binding protein, conserved site / Oxysterol-binding protein superfamily / Oxysterol-binding protein / Oxysterol-binding protein family signature. / Porin ...Helix Hairpins - #2720 / Porin - #120 / Alpha-Beta Plaits - #3490 / Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #1430 / Oxysterol-binding protein / Oxysterol-binding protein, conserved site / Oxysterol-binding protein superfamily / Oxysterol-binding protein / Oxysterol-binding protein family signature. / Porin / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Helix non-globular / Special / Helix Hairpins / Alpha-Beta Plaits / Beta Barrel / 2-Layer Sandwich / Orthogonal Bundle / Mainly Beta / Mainly Alpha / Alpha Beta 類似検索 - ドメイン・相同性
Chem-L39 / Oxysterol-binding protein homolog 4 類似検索 - 構成要素
構造決定の手法: 分子置換 / 解像度: 1.87→20 Å / Cor.coef. Fo:Fc: 0.926 / Cor.coef. Fo:Fc free: 0.89 / WRfactor Rfree: 0.2525 / WRfactor Rwork: 0.1996 / Occupancy max: 1 / Occupancy min: 1 / FOM work R set: 0.7841 / SU B: 4.308 / SU ML: 0.123 / SU R Cruickshank DPI: 0.175 / SU Rfree: 0.1711 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0.175 / ESU R Free: 0.171 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
反射数
%反射
Selection details
Rfree
0.2708
3700
5 %
RANDOM
Rwork
0.2143
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obs
0.2171
74018
87.24 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK