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- PDB-4eqa: Crystal structure of PA1844 in complex with PA1845 from Pseudomon... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4eqa | ||||||
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Title | Crystal structure of PA1844 in complex with PA1845 from Pseudomonas aeruginosa PAO1 | ||||||
![]() | (Putative uncharacterized protein) x 2 | ||||||
![]() | UNKNOWN FUNCTION / TYPE VI SECRETION / T6S / ANTITOXIN-TOXIN complex | ||||||
Function / homology | ![]() gamma-D-glutamyl-meso-diaminopimelate peptidase / amidase activity / host cell membrane / extracellular region / membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Shang, G. / Li, N. / Zhang, J. / Lu, D. / Yu, Q. / Zhao, Y. / Liu, X. / Xu, S. / Gu, L. | ||||||
![]() | ![]() Title: Structural insight into how Pseudomonas aeruginosa peptidoglycanhydrolase Tse1 and its immunity protein Tsi1 function. Authors: Shang, G. / Liu, X. / Lu, D. / Zhang, J. / Li, N. / Zhu, C. / Liu, S. / Yu, Q. / Zhao, Y. / Zhang, H. / Hu, J. / Cang, H. / Xu, S. / Gu, L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 268.6 KB | Display | ![]() |
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PDB format | ![]() | 217.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 444.5 KB | Display | ![]() |
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Full document | ![]() | 449.5 KB | Display | |
Data in XML | ![]() | 31.6 KB | Display | |
Data in CIF | ![]() | 47.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4eq8SC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 15640.782 Da / Num. of mol.: 2 / Fragment: The trunction, UNP residues 6-148 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Protein | Mass: 16855.641 Da / Num. of mol.: 2 / Fragment: The trunction, UNP residues 20-172 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.06 Å3/Da / Density % sol: 40.32 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 20% PEG 3350, 0.1M Bis-Tris pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Nov 8, 2011 |
Radiation | Monochromator: SAGITALLY FOCUSED SI(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9792 Å / Relative weight: 1 |
Reflection | Resolution: 1.6→50 Å / Num. all: 68954 / Num. obs: 68954 / % possible obs: 99.6 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 3.7 % / Biso Wilson estimate: 23.2 Å2 / Rmerge(I) obs: 0.108 / Rsym value: 0.108 / Net I/σ(I): 18.3 |
Reflection shell | Resolution: 1.6→1.66 Å / Redundancy: 3.6 % / Rmerge(I) obs: 0.364 / Mean I/σ(I) obs: 7.9 / Num. unique all: 6876 / Rsym value: 0.364 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4EQ8 Resolution: 1.6→27.22 Å / SU ML: 0.16 / σ(F): 0 / σ(I): 0 / Phase error: 21.13 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 45.564 Å2 / ksol: 0.354 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 1.6→27.22 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 14
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Refinement TLS params. | Method: refined / Origin x: -11.2997 Å / Origin y: 24.3289 Å / Origin z: -15.2746 Å
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Refinement TLS group | Selection details: ALL |