+Open data
-Basic information
Entry | Database: PDB / ID: 4emg | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of SpLsm3 | ||||||
Components | Probable U6 snRNA-associated Sm-like protein LSm3 | ||||||
Keywords | RNA BINDING PROTEIN / Sm fold / mRNA decay / Lsm proteins | ||||||
Function / homology | Function and homology information mRNA decay by 5' to 3' exoribonuclease / Lsm2-8 complex / chromosome, telomeric repeat region / Lsm1-7-Pat1 complex / U6 snRNP / P-body assembly / telomerase holoenzyme complex / telomerase RNA binding / U2 snRNP / precatalytic spliceosome ...mRNA decay by 5' to 3' exoribonuclease / Lsm2-8 complex / chromosome, telomeric repeat region / Lsm1-7-Pat1 complex / U6 snRNP / P-body assembly / telomerase holoenzyme complex / telomerase RNA binding / U2 snRNP / precatalytic spliceosome / RNA folding / U5 snRNP / U2 snRNA binding / U4/U6 x U5 tri-snRNP complex / catalytic step 2 spliceosome / P-body / mRNA splicing, via spliceosome / chromatin binding / nucleolus / RNA binding / nucleus Similarity search - Function | ||||||
Biological species | Schizosaccharomyces pombe (fission yeast) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 2.7 Å | ||||||
Authors | Jiang, S.M. / Wu, D.H. / Song, H.W. | ||||||
Citation | Journal: Plos One / Year: 2012 Title: Crystal Structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe. Authors: Wu, D.H. / Jiang, S.M. / Bowler, M.W. / Song, H.W. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 4emg.cif.gz | 207.4 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb4emg.ent.gz | 176.5 KB | Display | PDB format |
PDBx/mmJSON format | 4emg.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 4emg_validation.pdf.gz | 526.6 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 4emg_full_validation.pdf.gz | 563.7 KB | Display | |
Data in XML | 4emg_validation.xml.gz | 37.2 KB | Display | |
Data in CIF | 4emg_validation.cif.gz | 54.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/em/4emg ftp://data.pdbj.org/pub/pdb/validation_reports/em/4emg | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2 |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit cell |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
|