- PDB-4e08: Crystal structure of Drosophila melanogaster DJ-1beta -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 400000000
Title
Crystal structure of Drosophila melanogaster DJ-1beta
Components
DJ-1 beta
Keywords
MOTOR PROTEIN / flavodoxin-like fold / stress response
Function / homology
Function and homology information
regulation of mitochondrial ATP synthesis coupled electron transport / regulation of neuromuscular synaptic transmission / negative regulation of developmental growth / larval locomotory behavior / : / protein deglycation, glyoxal removal / guanine deglycation, glyoxal removal / protein deglycase activity / oxidoreductase activity, acting on peroxide as acceptor / regulation of hydrogen peroxide metabolic process ...regulation of mitochondrial ATP synthesis coupled electron transport / regulation of neuromuscular synaptic transmission / negative regulation of developmental growth / larval locomotory behavior / : / protein deglycation, glyoxal removal / guanine deglycation, glyoxal removal / protein deglycase activity / oxidoreductase activity, acting on peroxide as acceptor / regulation of hydrogen peroxide metabolic process / adult locomotory behavior / cellular response to reactive oxygen species / regulation of synaptic plasticity / response to oxidative stress / mitochondrion / nucleus / cytosol Similarity search - Function
Protein/nucleic acid deglycase DJ-1 / DJ-1/PfpI / DJ-1/PfpI family / Class I glutamine amidotransferase (GATase) domain / Class I glutamine amidotransferase-like / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi