- PDB-4cdy: Spectroscopically-validated structure of cytochrome c prime from ... -
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基本情報
登録情報
データベース: PDB / ID: 4cdy
タイトル
Spectroscopically-validated structure of cytochrome c prime from Alcaligenes xylosoxidans, reduced by X-ray irradiation at 160K
要素
CYTOCHROME C'
キーワード
ELECTRON TRANSPORT / RESONANCE RAMAN / VALIDATION / GAS SENSOR / LIGAND DISCRIMINATION / FERRIC / HAEM / HEME / RADIOLYSIS
機能・相同性
機能・相同性情報
electron transport chain / periplasmic space / electron transfer activity / iron ion binding / heme binding 類似検索 - 分子機能
Cytochrome c prime, subgroup / Cytochrome c prime / Cytochrome c class II profile. / Cytochrome c, class II / Cytochrome C' / Cytochrome c/b562 / Cytochrome c/b562 / Four Helix Bundle (Hemerythrin (Met), subunit A) / Up-down Bundle / Mainly Alpha 類似検索 - ドメイン・相同性
解像度: 1.77→45.03 Å / Cor.coef. Fo:Fc: 0.956 / Cor.coef. Fo:Fc free: 0.941 / SU B: 2.521 / SU ML: 0.08 / 交差検証法: THROUGHOUT / ESU R: 0.116 / ESU R Free: 0.115 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
Rfactor
反射数
%反射
Selection details
Rfree
0.23885
785
5 %
RANDOM
Rwork
0.20394
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obs
0.20562
14900
98.09 %
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溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK