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- PDB-4buo: High Resolution Structure of Thermostable Agonist-bound Neurotens... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4buo | ||||||
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Title | High Resolution Structure of Thermostable Agonist-bound Neurotensin Receptor 1 Mutant without Lysozyme Fusion | ||||||
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![]() | SIGNALING PROTEIN / G PROTEIN COUPLED RECEPTOR / MEMBRANE PROTEIN | ||||||
Function / homology | ![]() response to antipsychotic drug / Peptide ligand-binding receptors / neuropeptide receptor binding / G protein-coupled neurotensin receptor activity / inositol phosphate catabolic process / symmetric synapse / response to mineralocorticoid / D-aspartate import across plasma membrane / positive regulation of gamma-aminobutyric acid secretion / regulation of membrane depolarization ...response to antipsychotic drug / Peptide ligand-binding receptors / neuropeptide receptor binding / G protein-coupled neurotensin receptor activity / inositol phosphate catabolic process / symmetric synapse / response to mineralocorticoid / D-aspartate import across plasma membrane / positive regulation of gamma-aminobutyric acid secretion / regulation of membrane depolarization / L-glutamate import across plasma membrane / positive regulation of arachidonic acid secretion / regulation of respiratory gaseous exchange / neuron spine / positive regulation of inhibitory postsynaptic potential / neuropeptide hormone activity / hyperosmotic response / digestive tract development / negative regulation of systemic arterial blood pressure / negative regulation of release of sequestered calcium ion into cytosol / positive regulation of glutamate secretion / G alpha (q) signalling events / positive regulation of inositol phosphate biosynthetic process / temperature homeostasis / response to corticosterone / response to lipid / cellular response to lithium ion / detection of temperature stimulus involved in sensory perception of pain / response to axon injury / neuropeptide signaling pathway / axon terminus / transport vesicle / response to amphetamine / blood vessel diameter maintenance / adult locomotory behavior / cellular response to dexamethasone stimulus / positive regulation of release of sequestered calcium ion into cytosol / cellular response to nerve growth factor stimulus / liver development / response to cocaine / dendritic shaft / learning / visual learning / terminal bouton / cytoplasmic side of plasma membrane / response to estradiol / perikaryon / dendritic spine / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / receptor ligand activity / positive regulation of apoptotic process / membrane raft / axon / negative regulation of gene expression / neuronal cell body / dendrite / protein-containing complex binding / positive regulation of gene expression / negative regulation of apoptotic process / cell surface / extracellular region / identical protein binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Egloff, P. / Hillenbrand, M. / Schlinkmann, K.M. / Batyuk, A. / Mittl, P. / Plueckthun, A. | ||||||
![]() | ![]() Title: Structure of Signaling-Competent Neurotensin Receptor 1 Obtained by Directed Evolution in Escherichia Coli Authors: Egloff, P. / Hillenbrand, M. / Klenk, C. / Batyuk, A. / Heine, P. / Balada, S. / Schlinkmann, K.M. / Scott, D.J. / Schuetz, M. / Plueckthun, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 263.4 KB | Display | ![]() |
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PDB format | ![]() | 215.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 478.3 KB | Display | ![]() |
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Full document | ![]() | 490.9 KB | Display | |
Data in XML | ![]() | 23.5 KB | Display | |
Data in CIF | ![]() | 31.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3zevSC ![]() 4bv0C ![]() 4bwbC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
NCS ensembles :
NCS oper: (Code: given Matrix: (-0.8974, -0.09648, 0.4305), Vector: |
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Components
#1: Protein | Mass: 37381.926 Da / Num. of mol.: 2 / Fragment: RESIDUES 50-272 AND 291-390 / Mutation: YES Source method: isolated from a genetically manipulated source Details: THERMOSTABLE MUTANT WITH INTRACELLULAR LOOP 3 DELETION B (E273-T290) Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Protein/peptide | Mass: 1087.277 Da / Num. of mol.: 2 / Fragment: C-TERMINUS, RESIDUES 8-13 Source method: isolated from a genetically manipulated source Details: RESIDUES 8-13 CORRESPOND TO NEUROTENSIN C- TERMINUS. RESIDUES 4-7 ARE PART OF AN ARTIFICIAL LINKER AND DO NOT CORRESPOND TO NEUROTENSIN SEQUENCE Source: (gene. exp.) ![]() ![]() ![]() ![]() #3: Chemical | ChemComp-GLY / Sequence details | CHAINS C AND D - THE SEQUENCE RRPYIL REPRESENTS | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.37 Å3/Da / Density % sol: 63.46 % / Description: NONE |
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Crystal grow | pH: 9.4 / Details: 21.5% (V/V) PEG600, 2 M NACL, 50 MM GLYCINE PH 9.4 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS / Detector: PIXEL / Date: Aug 6, 2012 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.75→50 Å / Num. obs: 32141 / % possible obs: 99.9 % / Redundancy: 13.1 % / Biso Wilson estimate: 109.97 Å2 / Rmerge(I) obs: 0.08 / Net I/σ(I): 19.85 |
Reflection shell | Resolution: 2.75→2.84 Å / Redundancy: 13.9 % / Mean I/σ(I) obs: 0.45 / % possible all: 88.7 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 3ZEV Resolution: 2.75→19.821 Å / SU ML: 0.55 / σ(F): 1.35 / Phase error: 36.94 / Stereochemistry target values: ML / Details: PHENIX AND REFMAC WERE USED.
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.75→19.821 Å
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Refine LS restraints |
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Refine LS restraints NCS |
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LS refinement shell |
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