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Yorodumi- PDB-4aay: Crystal Structure of the arsenite oxidase protein complex from Rh... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4aay | ||||||
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Title | Crystal Structure of the arsenite oxidase protein complex from Rhizobium species strain NT-26 | ||||||
Components |
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Keywords | OXIDOREDUCTASE / RIESKE / IRON SULFUR / MOLYBDOPTERIN | ||||||
Function / homology | Function and homology information arsenate reductase (azurin) / oxidoreductase complex / molybdopterin cofactor binding / cellular respiration / 3 iron, 4 sulfur cluster binding / 2 iron, 2 sulfur cluster binding / oxidoreductase activity / metal ion binding Similarity search - Function | ||||||
Biological species | ARSENITE-OXIDISING BACTERIUM NT-26 (unknown) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.7 Å | ||||||
Authors | Oke, M. / Santini, J.M. / Naismith, J.H. | ||||||
Citation | Journal: Plos One / Year: 2013 Title: The Respiratory Arsenite Oxidase: Structure and the Role of Residues Surrounding the Rieske Cluster. Authors: Warelow, T.P. / Oke, M. / Schoepp-Cothenet, B. / Dahl, J.U. / Bruselat, N. / Sivalingam, G.N. / Leimkuhler, S. / Thalassinos, K. / Kappler, U. / Naismith, J.H. / Santini, J.M. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AI" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AI" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "CI" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "EI" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "GI" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4aay.cif.gz | 1.4 MB | Display | PDBx/mmCIF format |
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PDB format | pdb4aay.ent.gz | 1.2 MB | Display | PDB format |
PDBx/mmJSON format | 4aay.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 4aay_validation.pdf.gz | 2.6 MB | Display | wwPDB validaton report |
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Full document | 4aay_full_validation.pdf.gz | 2.7 MB | Display | |
Data in XML | 4aay_validation.xml.gz | 127.1 KB | Display | |
Data in CIF | 4aay_validation.cif.gz | 172.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/aa/4aay ftp://data.pdbj.org/pub/pdb/validation_reports/aa/4aay | HTTPS FTP |
-Related structure data
Related structure data | 1g8jS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: _ / Beg auth comp-ID: ALA / Beg label comp-ID: ALA / Refine code: _
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