- PDB-3zhn: Crystal structure of the T6SS lipoprotein TssJ1 from Pseudomonas ... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 3zhn
Title
Crystal structure of the T6SS lipoprotein TssJ1 from Pseudomonas aeruginosa
Components
PA_0080
Keywords
TOXIN / PATHOGEN / TYPE VI SECRETION SYSTEM
Function / homology
Type VI secretion system, lipoprotein SciN / Type VI secretion system, lipoprotein SciN / Type VI secretion protein SciN-like superfamily / Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 / Immunoglobulin-like / Sandwich / Mainly Beta / IODIDE ION / Uncharacterized protein
Type: RIGAKU RAXIS II / Detector: IMAGE PLATE / Date: Mar 1, 2011 / Details: MIRRORS
Radiation
Monochromator: NI FILTER / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.5418 Å / Relative weight: 1
Reflection
Resolution: 1.4→19.24 Å / Num. obs: 24682 / % possible obs: 98.7 % / Observed criterion σ(I): 2 / Redundancy: 9.27 % / Rmerge(I) obs: 0.096 / Net I/σ(I): 10.2
Reflection shell
Resolution: 1.4→1.45 Å / Redundancy: 5.61 % / Rmerge(I) obs: 0.46 / Mean I/σ(I) obs: 2.7 / % possible all: 87
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Processing
Software
Name
Version
Classification
d*TREK
datareduction
SCALEPACK
datascaling
SHELX
phasing
PHASER
phasing
REFMAC
5.7.0029
refinement
Refinement
Method to determine structure: SAD Starting model: NONE Resolution: 1.4→22.75 Å / Cor.coef. Fo:Fc: 0.971 / Cor.coef. Fo:Fc free: 0.954 / SU B: 2.302 / SU ML: 0.04 / Cross valid method: THROUGHOUT / ESU R: 0.07 / ESU R Free: 0.065 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.U VALUES REFINED INDIVIDUALLY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.20187
1242
5.1 %
RANDOM
Rwork
0.16127
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obs
0.1633
23337
98.41 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK