- PDB-3vmy: Crystal Structure of a parallel coiled-coil dimerization domain f... -
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基本情報
登録情報
データベース: PDB / ID: 3vmy
タイトル
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (REDUCTION/DTT)
要素
Voltage-gated hydrogen channel 1
キーワード
MEMBRANE PROTEIN / COILED-COIL / ASSEMBLY DOMAIN / ION TRANSPORT
機能・相同性
機能・相同性情報
voltage-gated proton channel activity / Sperm Motility And Taxes / regulation of acrosome reaction / ROS and RNS production in phagocytes / cellular response to pH / response to pH / regulation of reactive oxygen species biosynthetic process / cellular response to zinc ion / monoatomic ion channel complex / response to zinc ion ...voltage-gated proton channel activity / Sperm Motility And Taxes / regulation of acrosome reaction / ROS and RNS production in phagocytes / cellular response to pH / response to pH / regulation of reactive oxygen species biosynthetic process / cellular response to zinc ion / monoatomic ion channel complex / response to zinc ion / sperm flagellum / Neutrophil degranulation / proton transmembrane transport / positive regulation of superoxide anion generation / regulation of intracellular pH / phagocytic vesicle membrane / apical plasma membrane / innate immune response / protein homodimerization activity / identical protein binding / membrane / plasma membrane 類似検索 - 分子機能
Voltage-gated hydrogen channel 1, C-terminal membrane-localisation domain / Voltage-gated hydrogen channel 1 / C-terminal membrane-localisation domain of ion-channel, VCN1 / Single alpha-helices involved in coiled-coils or other helix-helix interfaces - #170 / Voltage-dependent channel domain superfamily / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Ion transport domain / Ion transport protein / Up-down Bundle / Mainly Alpha 類似検索 - ドメイン・相同性
解像度: 1.47→29.98 Å / Cor.coef. Fo:Fc: 0.956 / Cor.coef. Fo:Fc free: 0.936 / SU B: 3.219 / SU ML: 0.056 / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R Free: 0.09 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES
Rfactor
反射数
%反射
Selection details
Rfree
0.234
1560
5 %
RANDOM
Rwork
0.198
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-
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obs
0.2
30921
99.5 %
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: MASK