[English] 日本語
![](img/lk-miru.gif)
- PDB-3ulx: Crystal structural of the conserved domain of Rice Stress-respons... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 3ulx | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structural of the conserved domain of Rice Stress-responsive NAC1 | ||||||
![]() | Stress-induced transcription factor NAC1 | ||||||
![]() | DNA BINDING PROTEIN / NAC family / Stress-responsive | ||||||
Function / homology | ![]() positive regulation of response to salt stress / positive regulation of response to water deprivation / sequence-specific DNA binding / regulation of DNA-templated transcription / protein homodimerization activity / nucleus Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lou, Z.Y. / Chen, Q.F. / Wang, Q. / Xiong, L.Z. | ||||||
![]() | ![]() Title: A structural view of the conserved domain of Rice Stress-responsive NAC1 Authors: Lou, Z.Y. / Chen, Q.F. / Wang, Q. / Xiong, L.Z. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 43.9 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 29.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 422 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 430.2 KB | Display | |
Data in XML | ![]() | 9.2 KB | Display | |
Data in CIF | ![]() | 11.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1ut4S S: Starting model for refinement |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 20028.951 Da / Num. of mol.: 1 / Fragment: UNP residues 1-174 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: snac1 / Production host: ![]() ![]() |
---|---|
#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.33 Å3/Da / Density % sol: 47.16 % |
---|---|
Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 0.1M HEPES, 1.5M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Nov 7, 2010 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→50 Å / Num. all: 6433 / Num. obs: 6435 / % possible obs: 100 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Biso Wilson estimate: 57.3 Å2 |
-
Processing
Software |
| ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1UT4 Resolution: 2.6→32.507 Å / Occupancy max: 1 / Occupancy min: 1 / FOM work R set: 0.7813 / SU ML: 0.59 / σ(F): 1.35 / Phase error: 26.5 / Stereochemistry target values: ML
| ||||||||||||||||||||||||
Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 63.391 Å2 / ksol: 0.373 e/Å3 | ||||||||||||||||||||||||
Displacement parameters | Biso max: 104.28 Å2 / Biso mean: 55.8857 Å2 / Biso min: 20 Å2
| ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→32.507 Å
| ||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||
LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 2 / % reflection obs: 100 %
|