登録情報 データベース : PDB / ID : 3qqc 構造の表示 ダウンロードとリンクタイトル Crystal structure of archaeal Spt4/5 bound to the RNAP clamp domain 要素DNA-directed RNA polymerase subunit b, DNA-directed RNA polymerase subunit a', DNA-directed RNA polymerase subunit A'' DNA-directed RNA polymerase, subunit e'' Transcription antitermination protein nusG 詳細キーワード TRANSCRIPTION / fusion protein / chimera protein / multiprotein complex機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
transcription elongation-coupled chromatin remodeling / RNA polymerase II activity / translation elongation factor activity / DNA-directed RNA polymerase complex / regulation of DNA-templated transcription elongation / ribonucleoside binding / DNA-directed 5'-3' RNA polymerase activity / DNA-directed RNA polymerase / ribosome / structural constituent of ribosome ... transcription elongation-coupled chromatin remodeling / RNA polymerase II activity / translation elongation factor activity / DNA-directed RNA polymerase complex / regulation of DNA-templated transcription elongation / ribonucleoside binding / DNA-directed 5'-3' RNA polymerase activity / DNA-directed RNA polymerase / ribosome / structural constituent of ribosome / mRNA binding / DNA-templated transcription / regulation of DNA-templated transcription / regulation of transcription by RNA polymerase II / DNA binding / zinc ion binding / cytoplasm 類似検索 - 分子機能 Rubrerythrin, domain 2 - #90 / Archaeal transcription elongation factor Spt4 / Transcription elongation factor Spt5, archaeal / Archaeal transcription elongation factor Spt4 superfamily / NusG, N-terminal domain / DNA-directed RNA polymerase subunit Rpo1C / DNA-directed RNA polymerase subunit Rpo1N / DNA-directed RNA polymerase subunit Rpo2 / Spt4/RpoE2 zinc finger / Spt4/RpoE2 zinc finger ... Rubrerythrin, domain 2 - #90 / Archaeal transcription elongation factor Spt4 / Transcription elongation factor Spt5, archaeal / Archaeal transcription elongation factor Spt4 superfamily / NusG, N-terminal domain / DNA-directed RNA polymerase subunit Rpo1C / DNA-directed RNA polymerase subunit Rpo1N / DNA-directed RNA polymerase subunit Rpo2 / Spt4/RpoE2 zinc finger / Spt4/RpoE2 zinc finger / Spt4/RpoE2 zinc finger / NGN domain / Transcription elongation factor SPT5 / Early transcription elongation factor of RNA pol II, NGN section / NusG, N-terminal / In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. / NusG, N-terminal domain superfamily / Rubrerythrin, domain 2 / RNA polymerase Rpb2, domain 4 / RNA polymerase Rpb2, domain 4 / RNA polymerase Rpb2, domain 5 / RNA polymerase Rpb2, domain 5 / RNA polymerase subunit RPABC4/transcription elongation factor Spt4 / Single Sheet / RNA polymerase Rpb1, domain 3 superfamily / DNA-directed RNA polymerase, subunit beta-prime / RNA polymerase Rpb2, domain 2 superfamily / RNA polymerase Rpb1, domain 3 / RNA polymerase Rpb1, domain 3 / RNA polymerase Rpb1, domain 1 / RNA polymerase Rpb1, domain 1 / RNA polymerase, alpha subunit / RNA polymerase Rpb1, domain 5 / RNA polymerase Rpb1, domain 4 / RNA polymerase Rpb1, domain 2 / RNA polymerase Rpb1, domain 5 / RNA polymerase Rpb1, domain 4 / RNA polymerase, beta subunit, protrusion / RNA polymerase beta subunit / RNA polymerase, N-terminal / RNA polymerase Rpb1, funnel domain superfamily / RNA polymerase I subunit A N-terminus / RNA polymerase Rpb2, domain 2 / RNA polymerase Rpb2, domain 2 / RNA polymerase, beta subunit, conserved site / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerase Rpb2, OB-fold / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerases beta chain signature. / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain / DNA-directed RNA polymerase, subunit 2 / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily / RNA polymerase Rpb2, domain 6 / Ribosomal protein L24/L26, conserved site / KOW (Kyprides, Ouzounis, Woese) motif. / Translation protein SH3-like domain superfamily / KOW motif / KOW / Ribosomal protein L2, domain 2 / Alpha-Beta Plaits / 2-Layer Sandwich / Mainly Beta / Alpha Beta 類似検索 - ドメイン・相同性 Transcription elongation factor Spt5 / DNA-directed RNA polymerase subunit beta / DNA-directed RNA polymerase subunit / DNA-directed RNA polymerase subunit Rpo1C / Transcription elongation factor Spt4 類似検索 - 構成要素生物種 Pyrococcus furiosus (古細菌)手法 X線回折 / シンクロトロン / Molecular Replacement with SAD / 解像度 : 3.3 Å 詳細データ登録者 Martinez-Rucobo, F.W. 引用ジャーナル : Embo J. / 年 : 2011タイトル : Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity.著者 : Martinez-Rucobo, F.W. / Sainsbury, S. / Cheung, A.C. / Cramer, P. 履歴 登録 2011年2月15日 登録サイト : RCSB / 処理サイト : RCSB改定 1.0 2011年3月23日 Provider : repository / タイプ : Initial release改定 1.1 2011年7月13日 Group : Version format compliance改定 1.2 2013年9月18日 Group : Derived calculations改定 1.3 2017年8月9日 Group : Data collection / Refinement description / Source and taxonomyカテゴリ : diffrn_detector / entity_src_gen / software / Item : _diffrn_detector.detector改定 1.4 2023年9月13日 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description カテゴリ : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_ref_seq_dif / struct_site Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id
すべて表示 表示を減らす Remark 999 Chain A is a fusion protein of three peptides. First peptide is DNA-directed RNA polymerase subunit ... Chain A is a fusion protein of three peptides. First peptide is DNA-directed RNA polymerase subunit b (residues 2-64 in this entry corresponding to UNP Q8U0M3 residues 1053-1115) which is linked (via two GLY GLY linker residues) to DNA-directed RNA polymerase subunit a' (residues 67-382 in this entry corresponding to UNP Q8U0M4 residues 3-318) which is then linked (via nine linker residues: GLY ALA GLY SER GLY ALA GLY SER GLY) to DNA-directed RNA polymerase subunit A'' (residues 392-429 in this entry corresponding to UNP Q8U0M5 residues 334-371).