Entry | Database: PDB / ID: 3mop |
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Title | The ternary Death Domain complex of MyD88, IRAK4, and IRAK2 |
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Components | - Interleukin-1 receptor-associated kinase 4
- Interleukin-1 receptor-associated kinase-like 2
- Myeloid differentiation primary response protein MyD88
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Keywords | SIGNALING PROTEIN / IMMUNE SYSTEM / Death domain complex / helical symmetry / single-stranded helical assembly / left-handed helical assembly |
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Function / homology | Function and homology information
regulation of cytokine-mediated signaling pathway / : / regulation of chemokine (C-X-C motif) ligand 1 production / Toll binding / MyD88 deficiency (TLR5) / regulation of chemokine (C-X-C motif) ligand 2 production / ATP-dependent histone chaperone activity / neutrophil-mediated killing of bacterium / induced systemic resistance / leukocyte activation involved in inflammatory response ...regulation of cytokine-mediated signaling pathway / : / regulation of chemokine (C-X-C motif) ligand 1 production / Toll binding / MyD88 deficiency (TLR5) / regulation of chemokine (C-X-C motif) ligand 2 production / ATP-dependent histone chaperone activity / neutrophil-mediated killing of bacterium / induced systemic resistance / leukocyte activation involved in inflammatory response / TIR domain binding / : / response to molecule of fungal origin / toll-like receptor 8 signaling pathway / positive regulation of lymphocyte proliferation / response to peptidoglycan / positive regulation of interleukin-23 production / establishment of endothelial intestinal barrier / IRAK4 deficiency (TLR5) / regulation of neutrophil migration / cellular response to oxidised low-density lipoprotein particle stimulus / MyD88 dependent cascade initiated on endosome / TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation / MyD88 cascade initiated on plasma membrane / Toll signaling pathway / Toll-like receptor binding / DEx/H-box helicases activate type I IFN and inflammatory cytokines production / neutrophil activation involved in immune response / neutrophil migration / interleukin-33-mediated signaling pathway / microglia differentiation / toll-like receptor 9 signaling pathway / RIP-mediated NFkB activation via ZBP1 / neutrophil mediated immunity / positive regulation of cytokine production involved in inflammatory response / death receptor binding / interleukin-1 receptor binding / MyD88 deficiency (TLR2/4) / positive regulation of macrophage cytokine production / MyD88-dependent toll-like receptor signaling pathway / interleukin-1-mediated signaling pathway / IRAK4 deficiency (TLR2/4) / 3'-UTR-mediated mRNA stabilization / skin development / MyD88:MAL(TIRAP) cascade initiated on plasma membrane / toll-like receptor 4 signaling pathway / positive regulation of NLRP3 inflammasome complex assembly / toll-like receptor signaling pathway / extrinsic component of plasma membrane / type I interferon-mediated signaling pathway / negative regulation of NF-kappaB transcription factor activity / defense response to protozoan / positive regulation of interleukin-17 production / response to amine / immunoglobulin mediated immune response / positive regulation of type I interferon production / canonical NF-kappaB signal transduction / response to amino acid / phagocytosis / signaling adaptor activity / positive regulation of chemokine production / JNK cascade / lipopolysaccharide-mediated signaling pathway / extrinsic component of cytoplasmic side of plasma membrane / IRAK2 mediated activation of TAK1 complex / IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation / p75NTR recruits signalling complexes / TRAF6-mediated induction of TAK1 complex within TLR4 complex / TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling / response to interleukin-1 / JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 / positive regulation of interleukin-1 beta production / positive regulation of interleukin-8 production / activated TAK1 mediates p38 MAPK activation / positive regulation of JNK cascade / positive regulation of smooth muscle cell proliferation / TAK1-dependent IKK and NF-kappa-B activation / NOD1/2 Signaling Pathway / response to organic cyclic compound / cytokine-mediated signaling pathway / Interleukin-1 signaling / cellular response to mechanical stimulus / : / positive regulation of interleukin-6 production / positive regulation of tumor necrosis factor production / PIP3 activates AKT signaling / kinase activity / positive regulation of NF-kappaB transcription factor activity / gene expression / ER-Phagosome pathway / regulation of inflammatory response / PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling / cellular response to lipopolysaccharide / positive regulation of canonical NF-kappaB signal transduction / response to ethanol / defense response to virus / molecular adaptor activity / cell surface receptor signaling pathway / non-specific serine/threonine protein kinase / endosome membraneSimilarity search - Function Interleukin-1 receptor-associated kinase-like 2 / IRAK2, death domain / Myeloid differentiation primary response protein MyD88 / MyD88, death domain / Interleukin-1 receptor-associated kinase 4 / IRAK4, Death domain / Death Domain, Fas / Death Domain, Fas / TIR domain / Death domain profile. ...Interleukin-1 receptor-associated kinase-like 2 / IRAK2, death domain / Myeloid differentiation primary response protein MyD88 / MyD88, death domain / Interleukin-1 receptor-associated kinase 4 / IRAK4, Death domain / Death Domain, Fas / Death Domain, Fas / TIR domain / Death domain profile. / DEATH domain, found in proteins involved in cell death (apoptosis). / Death domain / Death domain / Toll - interleukin 1 - resistance / TIR domain profile. / Toll/interleukin-1 receptor homology (TIR) domain / Toll/interleukin-1 receptor homology (TIR) domain superfamily / Death-like domain superfamily / Protein tyrosine and serine/threonine kinase / Serine-threonine/tyrosine-protein kinase, catalytic domain / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / Orthogonal Bundle / Mainly AlphaSimilarity search - Domain/homology Interleukin-1 receptor-associated kinase-like 2 / Myeloid differentiation primary response protein MyD88 / Interleukin-1 receptor-associated kinase 4Similarity search - Component |
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Biological species | Homo sapiens (human) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MIR / Resolution: 3.4 Å |
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Authors | Lin, S.-C. / Lo, Y.-C. / Wu, H. |
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Citation | Journal: Nature / Year: 2010 Title: Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling. Authors: Lin, S.C. / Lo, Y.C. / Wu, H. |
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History | Deposition | Apr 23, 2010 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Jun 2, 2010 | Provider: repository / Type: Initial release |
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Revision 1.1 | Jul 13, 2011 | Group: Version format compliance |
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Revision 1.2 | Nov 8, 2017 | Group: Refinement description / Category: software Item: _software.classification / _software.contact_author ..._software.classification / _software.contact_author / _software.contact_author_email / _software.date / _software.language / _software.location / _software.name / _software.type / _software.version |
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Revision 1.3 | Feb 21, 2024 | Group: Data collection / Database references Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ref_seq_dif Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details |
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