RepB-like DNA primase domain / RepB DNA-primase N-terminal domain / Single helix bin / Single alpha-helices involved in coiled-coils or other helix-helix interfaces / Up-down Bundle / Mainly Alpha 類似検索 - ドメイン・相同性
: / DNA / DNA (> 10) / Replication protein B 類似検索 - 構成要素
解像度: 2.7→19 Å / Cor.coef. Fo:Fc: 0.908 / Cor.coef. Fo:Fc free: 0.863 / SU B: 30.309 / SU ML: 0.285 / TLS residual ADP flag: LIKELY RESIDUAL / 交差検証法: THROUGHOUT / ESU R Free: 0.401 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
反射数
%反射
Selection details
Rfree
0.274
368
5 %
RANDOM
Rwork
0.224
-
-
-
obs
0.226
6997
100 %
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: BABINET MODEL WITH MASK
原子変位パラメータ
Biso mean: 31.47 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0.36 Å2
0 Å2
0 Å2
2-
-
0.36 Å2
0 Å2
3-
-
-
-0.72 Å2
精密化ステップ
サイクル: LAST / 解像度: 2.7→19 Å
タンパク質
核酸
リガンド
溶媒
全体
原子数
1417
546
0
24
1987
拘束条件
Refine-ID
タイプ
Dev ideal
Dev ideal target
数
X-RAY DIFFRACTION
r_bond_refined_d
0.005
0.021
2049
X-RAY DIFFRACTION
r_bond_other_d
X-RAY DIFFRACTION
r_angle_refined_deg
0.947
2.29
2887
X-RAY DIFFRACTION
r_angle_other_deg
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
4.605
5
186
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
36.977
24.857
70
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
15.163
15
236
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
15.321
15
13
X-RAY DIFFRACTION
r_chiral_restr
0.051
0.2
318
X-RAY DIFFRACTION
r_gen_planes_refined
0.002
0.02
1395
X-RAY DIFFRACTION
r_gen_planes_other
X-RAY DIFFRACTION
r_nbd_refined
0.158
0.2
768
X-RAY DIFFRACTION
r_nbd_other
X-RAY DIFFRACTION
r_nbtor_refined
0.28
0.2
1334
X-RAY DIFFRACTION
r_nbtor_other
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.106
0.2
71
X-RAY DIFFRACTION
r_xyhbond_nbd_other
X-RAY DIFFRACTION
r_metal_ion_refined
X-RAY DIFFRACTION
r_metal_ion_other
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.125
0.2
42
X-RAY DIFFRACTION
r_symmetry_vdw_other
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.068
0.2
9
X-RAY DIFFRACTION
r_symmetry_hbond_other
X-RAY DIFFRACTION
r_symmetry_metal_ion_refined
X-RAY DIFFRACTION
r_symmetry_metal_ion_other
X-RAY DIFFRACTION
r_mcbond_it
0.198
1.5
954
X-RAY DIFFRACTION
r_mcbond_other
X-RAY DIFFRACTION
r_mcangle_it
0.353
2
1466
X-RAY DIFFRACTION
r_scbond_it
0.333
3
1438
X-RAY DIFFRACTION
r_scangle_it
0.658
4.5
1421
X-RAY DIFFRACTION
r_rigid_bond_restr
X-RAY DIFFRACTION
r_sphericity_free
X-RAY DIFFRACTION
r_sphericity_bonded
LS精密化 シェル
解像度: 2.7→2.77 Å / Total num. of bins used: 20
Rfactor
反射数
%反射
Rfree
0.324
26
-
Rwork
0.28
497
-
obs
-
-
100 %
精密化 TLS
手法: refined / Origin x: 10.4478 Å / Origin y: 16.5103 Å / Origin z: -10.3449 Å