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- PDB-3gwn: Crystal structure of the FAD binding domain from mimivirus sulfhy... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3gwn | ||||||
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Title | Crystal structure of the FAD binding domain from mimivirus sulfhydryl oxidase R596 | ||||||
![]() | Probable FAD-linked sulfhydryl oxidase R596 | ||||||
![]() | OXIDOREDUCTASE / FIVE HELIX BUNDLE / HOMODIMER / Disulfide bond / FAD / Flavoprotein / Virion | ||||||
Function / homology | ![]() flavin-dependent sulfhydryl oxidase activity / thiol oxidase / virion component Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Hakim, M. / Fass, D. | ||||||
![]() | ![]() Title: Dimer interface migration in a viral sulfhydryl oxidase Authors: Hakim, M. / Fass, D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 69.3 KB | Display | ![]() |
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PDB format | ![]() | 51.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.2 MB | Display | ![]() |
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Full document | ![]() | 1.2 MB | Display | |
Data in XML | ![]() | 16.6 KB | Display | |
Data in CIF | ![]() | 21.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3gwlC ![]() 1jr8S S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 13297.046 Da / Num. of mol.: 2 / Fragment: mimivirus R596 FAD binding domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Chemical | #4: Chemical | ChemComp-GOL / | #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.31 Å3/Da / Density % sol: 46.67 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 8 Details: 0.5M ammonium sulfate, 25% PEG 4K, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV++ / Detector: IMAGE PLATE / Date: Sep 28, 2008 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.78→50 Å / Num. all: 24453 / Num. obs: 24259 / % possible obs: 99.2 % / Observed criterion σ(I): -3 / Redundancy: 11.2 % / Biso Wilson estimate: 22.8 Å2 / Rsym value: 0.078 / Net I/σ(I): 12.5 |
Reflection shell | Resolution: 1.78→1.81 Å / Redundancy: 4.5 % / Mean I/σ(I) obs: 2.3 / Rsym value: 0.407 / % possible all: 97.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1JR8 Resolution: 1.78→50 Å / Cross valid method: THROUGHOUT / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 1.78→50 Å
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Refine LS restraints |
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