登録情報 | データベース: PDB / ID: 3gve |
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タイトル | Crystal structure of calcineurin-like phosphoesterase YfkN from Bacillus subtilis |
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要素 | YfkN protein |
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キーワード | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / alpha-beta-beta-alpha sandwich / PSI-2 / Protein Structure Initiative / Midwest Center for Structural Genomics / MCSG / Metal-binding / Nucleotide-binding |
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機能・相同性 | 機能・相同性情報
2',3'-cyclic-nucleotide 2'-phosphodiesterase / 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity / 3'-nucleotidase / 3'-nucleotidase activity / nucleotide catabolic process / 5'-nucleotidase / 5'-nucleotidase activity / outer membrane-bounded periplasmic space / nucleotide binding / extracellular region / metal ion binding類似検索 - 分子機能 CpdB, N-terminal metallophosphatase domain / 5'-nucleotidase signature 1. / 5'-Nucleotidase, conserved site / 5'-nucleotidase signature 2. / 5'-Nucleotidase, C-terminal / 5'-nucleotidase, C-terminal domain / 5'-Nucleotidase/apyrase / 5'-Nucleotidase, C-terminal domain superfamily / Metallo-dependent phosphatases / Purple Acid Phosphatase; chain A, domain 2 ...CpdB, N-terminal metallophosphatase domain / 5'-nucleotidase signature 1. / 5'-Nucleotidase, conserved site / 5'-nucleotidase signature 2. / 5'-Nucleotidase, C-terminal / 5'-nucleotidase, C-terminal domain / 5'-Nucleotidase/apyrase / 5'-Nucleotidase, C-terminal domain superfamily / Metallo-dependent phosphatases / Purple Acid Phosphatase; chain A, domain 2 / Calcineurin-like phosphoesterase domain, ApaH type / Calcineurin-like phosphoesterase / Metallo-dependent phosphatase-like / Gram-positive cocci surface proteins LPxTG motif profile. / LPXTG cell wall anchor domain / 4-Layer Sandwich / Alpha Beta類似検索 - ドメイン・相同性 CITRIC ACID / : / Trifunctional nucleotide phosphoesterase protein YfkN類似検索 - 構成要素 |
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生物種 |  Bacillus subtilis subsp. subtilis (枯草菌) |
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手法 | X線回折 / シンクロトロン / 単波長異常分散 / 解像度: 1.25 Å |
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データ登録者 | Kim, Y. / Marshall, N. / Cobb, G. / Joachimiak, A. / Midwest Center for Structural Genomics (MCSG) |
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引用 | ジャーナル: To be Published タイトル: Crystal Structure of Calcineurin-like Phosphoesterase from Bacillus subtilis 著者: Kim, Y. / Marshall, N. / Cobb, G. / Joachimiak, A. |
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履歴 | 登録 | 2009年3月30日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2009年4月28日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2011年7月13日 | Group: Source and taxonomy / Version format compliance |
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改定 1.2 | 2017年11月1日 | Group: Refinement description / カテゴリ: software |
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改定 1.3 | 2024年10月30日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Structure summary カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature / struct_conn / struct_ref_seq_dif / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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