- PDB-3f6c: CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF POSITIVE TRANSCRIPTION ... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 3f6c
Title
CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF POSITIVE TRANSCRIPTION REGULATOR evgA FROM ESCHERICHIA COLI
Components
Positive transcription regulator evgA
Keywords
DNA BINDING PROTEIN / STRUCTURAL GENOMICS / PSI-2 / PROTEIN STRUCTURE INITIATIVE / POSITIVE TRANSCRIPTION REGULATOR evgA / NEW YORK STRUCTURAL GENOMIX RESEARCH CONSORTIUM / NYSGXRC / Activator / DNA-binding / Phosphoprotein / Transcription / Transcription regulation / Two-component regulatory system / New York SGX Research Center for Structural Genomics
Function / homology
Function and homology information
phosphorelay signal transduction system / sequence-specific DNA binding / regulation of DNA-templated transcription / cytosol Similarity search - Function
Type: MAR CCD 165 mm / Detector: CCD / Date: Jun 14, 2008
Radiation
Monochromator: DIAMOND / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9793 Å / Relative weight: 1
Reflection
Resolution: 1.45→50 Å / Num. obs: 42192 / % possible obs: 99.4 % / Observed criterion σ(I): -0.5 / Redundancy: 3.7 % / Rmerge(I) obs: 0.085 / Net I/σ(I): 6.4
Reflection shell
Resolution: 1.45→1.5 Å / Redundancy: 3.1 % / Rmerge(I) obs: 0.308 / Mean I/σ(I) obs: 2.05 / % possible all: 95.9
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Processing
Software
Name
Version
Classification
SHELXCD
phasing
SHELXD
phasing
SHELXE
modelbuilding
RESOLVE
modelbuilding
REFMAC
5.2.0019
refinement
HKL-2000
datareduction
HKL-2000
datascaling
RESOLVE
phasing
Refinement
Method to determine structure: SAD / Resolution: 1.45→20 Å / Cor.coef. Fo:Fc: 0.948 / Cor.coef. Fo:Fc free: 0.926 / SU B: 1.391 / SU ML: 0.057 / Cross valid method: THROUGHOUT / ESU R: 0.086 / ESU R Free: 0.091 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.25591
1320
3.2 %
RANDOM
Rwork
0.21022
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-
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obs
0.2116
40555
99.74 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK
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