- PDB-3c4r: Crystal structure of an uncharacterized protein encoded by crypti... -
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基本情報
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データベース: PDB / ID: 3c4r
タイトル
Crystal structure of an uncharacterized protein encoded by cryptic prophage
要素
Uncharacterized protein
キーワード
STRUCTURAL GENOMICS / UNKNOWN FUNCTION / 10179a / uncharacterized protein / PSI-II / Protein Structure Initiative / New York SGX Research Center for Structural Genomics / NYSGXRC
機能・相同性
uncharacterized protein encoded by cryptic prophage fold / Putative bacterial toxin ydaT / Bacterial toxin YdaT / Bacterial toxin YdaT superfamily / Bacterial toxin ydaT / Orthogonal Bundle / Mainly Alpha / YdaT_toxin domain-containing protein / YdaT_toxin domain-containing protein
解像度: 2.3→2.38 Å / 冗長度: 4.6 % / Rmerge(I) obs: 0.394 / Mean I/σ(I) obs: 1 / Num. unique all: 1744 / % possible all: 60
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解析
ソフトウェア
名称
バージョン
分類
CNS
1.1
精密化
CBASS
データ収集
HKL-2000
データ削減
HKL-2000
データスケーリング
SHELXD
位相決定
SHARP
位相決定
ARP/wARP
モデル構築
精密化
構造決定の手法: 単波長異常分散 / 解像度: 2.3→31.09 Å / Rfactor Rfree error: 0.008 / Data cutoff high absF: 184194.67 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / 交差検証法: THROUGHOUT / σ(F): 0 / 立体化学のターゲット値: Engh & Huber 詳細: Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines.