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- PDB-3ab7: Crystal Structure of the Hypothetical Tandem-type Universal Stres... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3ab7 | ||||||
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Title | Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8 | ||||||
![]() | Putative uncharacterized protein TTHA0350 | ||||||
![]() | UNKNOWN FUNCTION / Tandem-type Universal Stress Protein | ||||||
Function / homology | Rossmann fold - #12370 / Universal stress protein A family / UspA / Universal stress protein family / Rossmann fold / 3-Layer(aba) Sandwich / ATP binding / Alpha Beta / UspA domain-containing protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Goto, M. / Iino, H. / Shimizu, N. / Kuramitsu, S. | ||||||
![]() | ![]() Title: Crystal Structure of the Hypothetical Tandem-type Universal Stress Protein TTHA0350 from Thermus thermophilus HB8 Authors: Iino, H. / Shimizu, N. / Ebihara, A. / Goto, M. / Hirotsu, K. / Kuramitsu, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 95.1 KB | Display | ![]() |
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PDB format | ![]() | 73.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 432.8 KB | Display | ![]() |
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Full document | ![]() | 441.6 KB | Display | |
Data in XML | ![]() | 19.2 KB | Display | |
Data in CIF | ![]() | 26.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 28045.219 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.19 Å3/Da / Density % sol: 61.39 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 500mM magnesium formate, 100mM HEPES-NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RIGAKU RAXIS V / Detector: IMAGE PLATE / Date: Oct 23, 2004 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→29.32 Å / Num. all: 24525 / Num. obs: 23907 / % possible obs: 97.5 % / Biso Wilson estimate: 47.6 Å2 |
Reflection shell | Resolution: 2.5→2.59 Å / % possible all: 77 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 34.3695 Å2 / ksol: 0.302821 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 59.2 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.52→29.32 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.5→2.66 Å / Rfactor Rfree error: 0.017 / Total num. of bins used: 6
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Xplor file |
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