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Yorodumi- PDB-393d: CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CC... -
+Open data
-Basic information
Entry | Database: PDB / ID: 393d | ||||||||||||||||||||
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Title | CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG) | ||||||||||||||||||||
Components | DNA/RNA (5'-D(*Keywords | DNA/RNA / A-T-RNA / DOUBLE HELIX / DNA-RNA COMPLEX | Function / homology | DNA/RNA hybrid | Function and homology information Biological species | synthetic construct (others) | Method | X-RAY DIFFRACTION / Resolution: 2 Å | Authors | Ban, C. / Sundaralingam, M. / Ramakrishnan, B. | Citation | Journal: To be Published | Title: Crystal Structure of Two Self-Complementary Chimeric Decamer d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG) Authors: Ban, C. / Ramakrishnan, B. / Sundaralingam, M. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 393d.cif.gz | 21.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb393d.ent.gz | 13.7 KB | Display | PDB format |
PDBx/mmJSON format | 393d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 393d_validation.pdf.gz | 322.9 KB | Display | wwPDB validaton report |
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Full document | 393d_full_validation.pdf.gz | 330.9 KB | Display | |
Data in XML | 393d_validation.xml.gz | 2.3 KB | Display | |
Data in CIF | 393d_validation.cif.gz | 3.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/93/393d ftp://data.pdbj.org/pub/pdb/validation_reports/93/393d | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA/RNA hybrid | Mass: 3062.980 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.04 Å3/Da / Density % sol: 39.69 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 6 Details: pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 291.00K | ||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Detector | Type: SIEMENS / Detector: AREA DETECTOR / Date: Jun 13, 1995 |
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Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2→20 Å / Num. obs: 3219 / % possible obs: 96 % / Observed criterion σ(I): 3 / Redundancy: 4 % / Rmerge(I) obs: 0.049 |
-Processing
Software |
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Refinement | Resolution: 2→8 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 2→8 Å
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Refine LS restraints |
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Xplor file | Serial no: 1 / Param file: PARAM11.DNA |