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Open data
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Basic information
Entry | Database: PDB / ID: 2zug | ||||||
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Title | Crystal structure of WSSV ICP11 | ||||||
![]() | ORF115 (WSSV285) (Wsv230) | ||||||
![]() | VIRAL PROTEIN / DNA mimic protein / dimer / White spot syndrome virus | ||||||
Function / homology | VP9 protein domain / White spot syndrome virus (WSSV), Orf116/126, N-terminal / VP9, N-terminal domain superfamily / VP9 protein / Alpha-Beta Plaits / 2-Layer Sandwich / Alpha Beta / ICP11/P9![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wang, A.H.-J. / Wang, H.-C. / Ko, T.-P. / Lo, C.-F. | ||||||
![]() | ![]() Title: White spot syndrome virus protein ICP11: A histone-binding DNA mimic that disrupts nucleosome assembly Authors: Wang, H.-C. / Wang, H.-C. / Ko, T.-P. / Lee, Y.-M. / Leu, J.-H. / Ho, C.-H. / Huang, W.-P. / Lo, C.-F. / Wang, A.H.-J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 39.3 KB | Display | ![]() |
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PDB format | ![]() | 31.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 10477.116 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.92 Å3/Da / Density % sol: 75.01 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 6.5 Details: 0.2M sodium acetate trihydrate, 2.2M ammonium sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
-Data collection
Diffraction |
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Detector |
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Radiation |
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Radiation wavelength |
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Reflection | Resolution: 2.72→30 Å / Num. all: 11756 / Num. obs: 11437 / % possible obs: 96.8 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 1 / Redundancy: 9.4 % / Rmerge(I) obs: 0.062 / Net I/σ(I): 30.3 | ||||||||||||||||||
Reflection shell | Resolution: 2.72→2.82 Å / Redundancy: 10.1 % / Rmerge(I) obs: 0.644 / Mean I/σ(I) obs: 3.2 / Num. unique all: 1158 / % possible all: 88.2 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 66.8 Å2 | |||||||||||||||||||||||||
Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.72→29.25 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.72→2.82 Å / Rfactor Rfree error: 0.035
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