+
Open data
-
Basic information
Entry | Database: PDB / ID: 2zny | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of the FFRP | ||||||
![]() | Uncharacterized HTH-type transcriptional regulator PH1519 | ||||||
![]() | DNA BINDING PROTEIN / transcription / DNA-binding / Transcription regulation | ||||||
Function / homology | ![]() response to amino acid / sequence-specific DNA binding / identical protein binding / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Yamada, M. / Suzuki, M. | ||||||
![]() | ![]() Title: Interactions between the archaeal transcription repressor FL11 and its coregulators lysine and arginine. Authors: Yamada, M. / Ishijima, S.A. / Suzuki, M. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 236.3 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 192.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 524.4 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 570.5 KB | Display | |
Data in XML | ![]() | 50.1 KB | Display | |
Data in CIF | ![]() | 68.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2znzC ![]() 1ri7S S: Starting model for refinement C: citing same article ( |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
2 | ![]()
| ||||||||
3 | ![]()
| ||||||||
4 | ![]()
| ||||||||
5 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 19151.221 Da / Num. of mol.: 8 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-ARG / #3: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 50.83 % |
---|---|
Crystal grow | Temperature: 294 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 25% PEG 3350, 0.3M CaCl2, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 294K |
-Data collection
Diffraction | Mean temperature: 95 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 270 / Detector: CCD / Date: Oct 17, 2007 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.59→50 Å / Num. all: 49860 / Num. obs: 47467 / % possible obs: 95.2 % / Observed criterion σ(F): 3 / Observed criterion σ(I): 3 / Rmerge(I) obs: 0.08 / Net I/σ(I): 19.1 |
Reflection shell | Resolution: 2.59→2.68 Å / Rmerge(I) obs: 0.223 / Mean I/σ(I) obs: 4.8 / % possible all: 98.1 |
-
Processing
Software |
| |||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: 1RI7 Resolution: 2.59→50 Å / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
| |||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.59→50 Å
|