- PDB-2yuo: Solution structure of the SH3 domain of mouse RUN and TBC1 domain... -
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Basic information
Entry
Database: PDB / ID: 2yuo
Title
Solution structure of the SH3 domain of mouse RUN and TBC1 domain containing 3
Components
RUN and TBC1 domain containing 3
Keywords
SIGNALING PROTEIN / CIP85 / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI
Function / homology
Function and homology information
regulation of Rab protein signal transduction / regulation of cell cycle => GO:0051726 / small GTPase binding => GO:0031267 / Rap protein signal transduction / plasma membrane to endosome transport / GTPase regulator activity / gap junction / activation of GTPase activity / GTPase activator activity / positive regulation of GTPase activity ...regulation of Rab protein signal transduction / regulation of cell cycle => GO:0051726 / small GTPase binding => GO:0031267 / Rap protein signal transduction / plasma membrane to endosome transport / GTPase regulator activity / gap junction / activation of GTPase activity / GTPase activator activity / positive regulation of GTPase activity / intracellular protein transport / positive regulation of protein catabolic process / cytosol Similarity search - Function
SGSM3, SH3 domain / RUN / RUN domain / RUN domain superfamily / RUN domain / RUN domain profile. / Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. / Rab-GTPase-TBC domain / Rab-GTPase-TBC domain superfamily / Rab-GTPase-TBC domain ...SGSM3, SH3 domain / RUN / RUN domain / RUN domain superfamily / RUN domain / RUN domain profile. / Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. / Rab-GTPase-TBC domain / Rab-GTPase-TBC domain superfamily / Rab-GTPase-TBC domain / TBC/rab GAP domain profile. / SH3 Domains / SH3 domain / SH3 type barrels. / Src homology 3 domains / SH3-like domain superfamily / Src homology 3 (SH3) domain profile. / SH3 domain / Roll / Mainly Beta Similarity search - Domain/homology
Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 800 MHz
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Processing
NMR software
Name
Version
Developer
Classification
XwinNMR
3.5
Bruker
collection
NMRPipe
20031121
Delaglio, F.
processing
NMNMRView
5.0.4
Johnson, B.A.
dataanalysis
KUJIRA
0.9747
Kobayashi, N.
dataanalysis
CYANA
2.0.17
Guntert, P.
structuresolution
CYANA
2.0.17
Guntert, P.
refinement
NMR representative
Selection criteria: lowest energy
NMR ensemble
Conformer selection criteria: structures with the least restraint violations, target function Conformers calculated total number: 100 / Conformers submitted total number: 20
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