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Open data
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Basic information
Entry | Database: PDB / ID: 2yc4 | ||||||
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Title | Intraflagellar Transport Complex 25-27 from Chlamydomonas | ||||||
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![]() | TRANSPORT PROTEIN / CILIUM / IFT COMPLEX | ||||||
Function / homology | ![]() intraciliary transport particle B / intraciliary transport / motile cilium / cytoskeleton / endosome / GTPase activity / GTP binding / Golgi apparatus / metal ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Bhogaraju, S. / Taschner, M. / Lorentzen, E. | ||||||
![]() | ![]() Title: Crystal Structure of the Intraflagellar Transport Complex 25/27. Authors: Bhogaraju, S. / Taschner, M. / Morawetz, M. / Basquin, C. / Lorentzen, E. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 131.4 KB | Display | ![]() |
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PDB format | ![]() | 101 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 458.9 KB | Display | ![]() |
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Full document | ![]() | 477 KB | Display | |
Data in XML | ![]() | 25.1 KB | Display | |
Data in CIF | ![]() | 33.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2yc2C ![]() 1tvgS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper:
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Components
-Protein , 2 types, 4 molecules ABCD
#1: Protein | Mass: 15690.838 Da / Num. of mol.: 2 / Fragment: RESIDUES 1-135 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Protein | Mass: 23070.252 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Non-polymers , 4 types, 30 molecules ![](data/chem/img/CA.gif)
![](data/chem/img/MG.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/MG.gif)
![](data/chem/img/CL.gif)
![](data/chem/img/HOH.gif)
#3: Chemical | #4: Chemical | ChemComp-MG / | #5: Chemical | ChemComp-CL / | #6: Water | ChemComp-HOH / | |
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-Details
Sequence details | C-TERMINAL TRUNCATION |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.1 Å3/Da / Density % sol: 42 % / Description: NONE |
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Crystal grow | pH: 6 / Details: 25%PEG 3350 50MM MES PH 6.0 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Feb 6, 2010 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.973 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→50 Å / Num. obs: 15717 / % possible obs: 99.3 % / Observed criterion σ(I): -3 / Redundancy: 3.5 % / Biso Wilson estimate: 48.27 Å2 / Rmerge(I) obs: 0.1 / Net I/σ(I): 14 |
Reflection shell | Resolution: 2.8→3 Å / Redundancy: 3 % / Rmerge(I) obs: 0.65 / Mean I/σ(I) obs: 2 / % possible all: 92 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1TVG Resolution: 2.8→46.848 Å / SU ML: 0.49 / σ(F): 2 / Phase error: 34.54 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL / Bsol: 39.813 Å2 / ksol: 0.309 e/Å3 | |||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 47 Å2
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Refinement step | Cycle: LAST / Resolution: 2.8→46.848 Å
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Refine LS restraints |
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LS refinement shell |
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